a22c5a962f355b0ab668bdda736b46ee *DESCRIPTION
60d08bacb46ff7d2c5d2b87799863730 *INDEX
9b680819235ae4b14ccdd7e1e9f576c1 *Meta/Rd.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
491307664047455c1bf1de01208b5d99 *Meta/hsearch.rds
2de01d0db540e3ed1ed3a9f71810540a *Meta/links.rds
df9daf5fcddbf1d2367453e3220daac4 *Meta/nsInfo.rds
64517e42a9fcff18bf4778846833540a *Meta/package.rds
3fbcc05a633fb84cc377b6a0e9cc4408 *Meta/vignette.rds
53aac4b8406c7d51549529a5a37b4a7c *NAMESPACE
e72e7a7d494c4535d12a9ebbc440ed98 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/chimeraviz
df93e065c464106d490080a4904acf7b *R/chimeraviz.rdb
7e23094ac1dab0dace74c81f1884aed7 *R/chimeraviz.rdx
64ff4638b09c4d5924e767627b561e35 *doc/chimeraviz-vignette.R
bb67c5ee09f2402d40410a309362c7ba *doc/chimeraviz-vignette.Rmd
a6084ff4d60feb75818e83bbf96e5ea0 *doc/chimeraviz-vignette.html
87d398aac603b39a8f07ee1f6126a57e *doc/index.html
e55e5dc836b4a3c695466425e1689137 *extdata/5267readsAligned.bam
37aeebb5c0e07f7cfea95ac632976e10 *extdata/5267readsAligned.bam.bai
7d39659a8e5980c647c14be7e8fe6446 *extdata/FusionMap_01_TestDataset_InputFastq.FusionReport.txt
bc36f846c1243a084ac74575bd836a3c *extdata/Homo_sapiens.GRCh37.74.sqlite
2eb13512a6bb23a08344a56afcf4c9eb *extdata/Homo_sapiens.GRCh37.74_subset.gtf
98c1fef7418b85ba2c6ca4653e15d9e1 *extdata/PRADA.acc.fusion.fq.TAF.tsv
cd67fbf2a0d9be82e3766108b3df3265 *extdata/UCSC.HG19.Human.CytoBandIdeogram.txt
b5dff93b4d4ddc385b4f4dcfc03c0cfe *extdata/UCSC.HG38.Human.CytoBandIdeogram.txt
ea201cb1b403b72eb9a192a17486c457 *extdata/UCSC.MM10.Mus.musculus.CytoBandIdeogram.txt
11459619996086c492c2c2bc638c6c99 *extdata/aeron_fusion_support.txt
4374716581d26ea26def36d58922914e *extdata/aeron_fusion_transcripts.fa
2cac51f13f061b165e0ee1857768025d *extdata/chimericJunctions_MCF-7.txt
0c88fb7fa76f5fcd28adfcf98e5c8a48 *extdata/defuse_833ke_results.filtered.tsv
050fb11bdb93ccd095dd5d6dbb0b3de2 *extdata/ericscript_SRR1657556.results.total.tsv
aedb9f9c55a5fa1746b08d2a778a3c72 *extdata/fusion5267and11759reads.bam
c1ed782433e7c6afbafcbf4532e5d9bc *extdata/fusion5267and11759reads.bam.bai
039db2abb9f0c27f14bc9cd839768ecb *extdata/fusion5267and11759reads.bedGraph
46ccf436289046497a9a3745971eb901 *extdata/fusioncatcher_833ke_final-list-candidate-fusion-genes.txt
1f4708fff839b2eb84e8784ba0dc2b6a *extdata/infusion_fusions.txt
415821637bb1d4c561eb8d59b12eb881 *extdata/jaffa_results.csv
0ef6610c2cf156419a99177f3e7d2105 *extdata/oncofuse.outfile
fd2918ff0eb3640a0577771fdce265db *extdata/protein_domains_5267.bed
65deac6da91d91956a391190723b80bc *extdata/reads.1.fq
1b3aad03ac2f8905867f365d783275c8 *extdata/reads.2.fq
51787d42de4ee1aebbe6e868ad13e0bf *extdata/reads_supporting_defuse_fusion_5267.1.fq
418250789cf47ad6c665b79c5492fde9 *extdata/reads_supporting_defuse_fusion_5267.2.fq
15a6e8fe67d523b82867398e87ef33d0 *extdata/soapfuse_833ke_final.Fusion.specific.for.genes
b92aa17bf9b020e9e1b2b28f741119d8 *extdata/squid_hcc1954_sv.txt
e15004a2c6a27ac6c5daa39a1f9fb9cb *extdata/star-fusion.fusion_candidates.final.abridged.txt
d4731be13f9ff066c44ae69e8b53795e *extdata/star-fusion.fusion_predictions.abridged.annotated.coding_effect.tsv
011f71c4c86b3ec6463f3ef123c06382 *help/AnIndex
3d3210d932408684d6896a74701003ad *help/Fusion-class.html
3d3210d932408684d6896a74701003ad *help/Fusion.html
cbafac6c4f043c5d484d2bf8ed028086 *help/PartnerGene-class.html
cbafac6c4f043c5d484d2bf8ed028086 *help/PartnerGene.html
7cc9ee16c1c4d149bc9d87b2c09ccb55 *help/add_fusion_reads_alignment.html
1b3e01f7458b9e1df32cc806cc2b8f05 *help/aliases.rds
c7d9fb6f179fcdd4a883b265a93157b3 *help/chimeraviz-internals-fusions_to_gene_label_data.html
db8c12718d2808f5ca3d8b2903a5adde *help/chimeraviz-internals-fusions_to_link_data.html
7dc53916663dd22bfb5bae4fd76034d4 *help/chimeraviz-internals-scaleListToInterval.html
d99ebae4cc5db5310ef566f096e08cd4 *help/chimeraviz.html
a11ffd4d7944c475012ce19091bb79fe *help/chimeraviz.rdb
e1a82f71cec389cc2fe8324414d3a810 *help/chimeraviz.rdx
17f5ef8cebabc566934b7a054cc7e8a8 *help/create_fusion_report.html
030632dd9fefd59b2bb6bb776675acc9 *help/decide_transcript_category.html
713542c5d7eb456dbaef5d7e8f95b064 *help/down_shift.html
554df8b00fdf3838b441cbbd5c7f3024 *help/downstream_partner_gene,Fusion-method.html
554df8b00fdf3838b441cbbd5c7f3024 *help/downstream_partner_gene.html
426b4ccf76349153e1ea1d995db5fd9c *help/fetch_reads_from_fastq.html
a74d8700d95cbd632fac955bfe3a29b4 *help/fusion_spanning_reads_count,Fusion-method.html
a74d8700d95cbd632fac955bfe3a29b4 *help/fusion_spanning_reads_count.html
3df5aa20ebc51c5b7c4960c5763899c9 *help/fusion_split_reads_count,Fusion-method.html
3df5aa20ebc51c5b7c4960c5763899c9 *help/fusion_split_reads_count.html
429aa87e308ce8692d64a1d0d4ad5e1d *help/fusion_to_data_frame.html
c28f93431f7154a7d0989bcf9900ade1 *help/get_ensembl_ids.html
ba8e20cedaac8dae30462de88dc7b390 *help/get_fusion_by_chromosome.html
d589dddd389080be4f7f1fe8c0eb2e67 *help/get_fusion_by_gene_name.html
be0b195377f8575225fd371cb433509e *help/get_fusion_by_id.html
01a8dbbb46bb251bf6851feaffcd811e *help/get_transcripts_ensembl_db.html
18b4cca7863c17d6f2820e41cdaf308a *help/import_aeron.html
372406f436a77ddfa6b796110f20fd4a *help/import_chimpipe.html
537da0e4ec5463e14ee8caf9723be60e *help/import_defuse.html
a14a48ba3af6d78d85e16f2469766cf6 *help/import_ericscript.html
f6e54325dfbea4113fa8f1a47d74c21b *help/import_function_non_ucsc.html
1779bb577dcfebb1fb012f73cd4e3f5d *help/import_fusioncatcher.html
b2715d60cdf882cc44fd5434b65b4a8d *help/import_fusionmap.html
9d04e65a8232704be0ae6534bd91c6e1 *help/import_infusion.html
c4d99c2942595d89a3dc4b6d28426eed *help/import_jaffa.html
ec2a685bb3f9ac379d37164c4ac947c0 *help/import_oncofuse.html
5a6379a49472a57bcc8a790ee88a35cf *help/import_prada.html
e30bcdfa0429fe5017981e8d8376931d *help/import_soapfuse.html
84e6e28641056033c449c02d33364a9d *help/import_squid.html
0d2243aeeb074dd6825b3eb4f1db7f2a *help/import_starfusion.html
f457e9bd3ecdcf4accefef791ffa9683 *help/partner_gene_ensembl_id,PartnerGene-method.html
f457e9bd3ecdcf4accefef791ffa9683 *help/partner_gene_ensembl_id.html
f584a9e59ce336673d40f43606e002a5 *help/partner_gene_junction_sequence,PartnerGene-method.html
f584a9e59ce336673d40f43606e002a5 *help/partner_gene_junction_sequence.html
f4cb918a6372b17fff0b58cef3426e74 *help/paths.rds
4faa770900ebacdb738a9fbdeaaf0b5e *help/plot_circle.html
9b7da3ac9cae5107a5b19fabb8c75a27 *help/plot_fusion.html
a27a93ca85afd0100cbdfd420636f930 *help/plot_fusion_reads.html
9b7da3ac9cae5107a5b19fabb8c75a27 *help/plot_fusion_separate.html
9b7da3ac9cae5107a5b19fabb8c75a27 *help/plot_fusion_together.html
7d5a36fa90d11be45e7611de2d63859a *help/plot_fusion_transcript.html
b66ebd19ef430e690c1b1183eea01605 *help/plot_fusion_transcript_with_protein_domain.html
19d921a872d9cb285d6b63e49ef2abc9 *help/plot_fusion_transcripts_graph.html
6f21b749995cc7401c4543c482045951 *help/plot_transcripts.html
f740c5dc2541d6d77e2f494e755549fb *help/raw_Homo_sapiens.GRCh37.74.html
ce949f8f3d7e9b1c3a7e24afb33d023d *help/raw_chimpipe.html
056f46a26406981b47f388d7c0caf82c *help/raw_cytobandhg19.html
db29cc6049e3dddf7eaee01cca828232 *help/raw_cytobandhg38.html
d09bd022e7d96fe7644f7ae785fa25ae *help/raw_defuse.html
a7eae95869c9f2dd2a8372bbc2b8feda *help/raw_ericscript.html
bec763c165d831116dc4673cfe9053cd *help/raw_fusion5267proteindomains.html
a9f041289743cb9dadeadb3642b7ac7f *help/raw_fusion5267reads.html
2f892d70f59e79c24b09673047f0b606 *help/raw_fusion5267readsBedGraph.html
be4384c97f43ffb1e132ae0f3960f13a *help/raw_fusioncatcher.html
ecfd021397f2acc6a1dcf74d51e7e9ec *help/raw_fusionmap.html
22d5c48b377bccfb3e467782e803dedc *help/raw_infusion.html
2857d46e8b0483f297d80aff4224beae *help/raw_jaffa.html
c87ee5df194c758ae5037bb1d7c5a839 *help/raw_oncofuse.html
ba1c91df3f4333334f13303cbfaa5ac7 *help/raw_prada.html
4bd4549511a9331fa6bbb0b1d24eb3a6 *help/raw_soapfuse.html
44ab43897bcba32efb17d46963ddd089 *help/raw_starfusion.html
88d1cf511b80cf86a17669f9f9f411ea *help/select_transcript.html
14dd998fc6559fecf6d6b29352c7aa7b *help/show,Fusion-method.html
c7ef60d6268c99767ea4e2a59f89dfff *help/show,PartnerGene-method.html
14dd998fc6559fecf6d6b29352c7aa7b *help/show-Fusion-method.html
c7ef60d6268c99767ea4e2a59f89dfff *help/show-PartnerGene-method.html
869a54f66c6cb7039e7707f980a09db0 *help/split_on_utr_and_add_feature.html
2e96292ca86d5c5b6b68f50f8093e401 *help/upstream_partner_gene,Fusion-method.html
2e96292ca86d5c5b6b68f50f8093e401 *help/upstream_partner_gene.html
e9fd057bde146243924e154d9f23f629 *help/write_fusion_reference.html
a7b3e79294fa7e26c932060fcd23b932 *html/00Index.html
89d565f71a37b0bc7111f0a7bf207318 *html/Fusion-class.html
259462e7ad50b305d2ba7f3496095327 *html/PartnerGene-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
a9d06f545e7e001fff88436745ea16d3 *html/add_fusion_reads_alignment.html
eb726519c8b71494de78b11ee89dbe6a *html/chimeraviz-internals-fusions_to_gene_label_data.html
6bbe143f87fc653f59efbc184fdd4d07 *html/chimeraviz-internals-fusions_to_link_data.html
abd7017345073f5bbb23a8aa1d285ef8 *html/chimeraviz-internals-scaleListToInterval.html
a38bb9d605d68a2e69b7ebe829bc0297 *html/chimeraviz.html
601f6e0a399133d47e1c203c89b50162 *html/create_fusion_report.html
62dedf502416d2aa7dcb44256674e4d5 *html/decide_transcript_category.html
f28bb249e609673dae3c3f4029ef5305 *html/down_shift.html
abfa99445873a709d23ff8eb3afa73dd *html/downstream_partner_gene.html
d796a57e5036f7fbb93c8d7d5673edb0 *html/fetch_reads_from_fastq.html
166603e754c3f427672c9bbd8260cba2 *html/fusion_spanning_reads_count.html
3d4011909e6fbe9bfe48e9495e5c5f0a *html/fusion_split_reads_count.html
84f7a86c6548df768f603d9d7a739226 *html/fusion_to_data_frame.html
31b74e6ea03172745c848d56986ffc99 *html/get_ensembl_ids.html
dff487558a5ea9d5961704e6dc408ee0 *html/get_fusion_by_chromosome.html
16f44ef2008d159d129b0f472f930d98 *html/get_fusion_by_gene_name.html
28d45dba9d9165467af527ffbba6f524 *html/get_fusion_by_id.html
8331975736ce4fc3ab47a0ab5d74264d *html/get_transcripts_ensembl_db.html
8bb8402b26e04bcec501d6af4a942738 *html/import_aeron.html
2f597d40251e24d4538d63900138130a *html/import_chimpipe.html
650223aa23a507e9bf5e565552e0c449 *html/import_defuse.html
da635573336e9d4e5c4371b50b1cd806 *html/import_ericscript.html
746f800aa9f5371dcb116f9b53248434 *html/import_function_non_ucsc.html
2494024e7f2f04454e096eea0c7e0edd *html/import_fusioncatcher.html
c9fb0fa6ea03223dc74bdaf165286bdb *html/import_fusionmap.html
f04e2976067f4100fb4b5971ba18e3bf *html/import_infusion.html
92f4bb03ede632eb5c43879d84276ec3 *html/import_jaffa.html
b02eb90162fd4086a6bab6ff1166a42c *html/import_oncofuse.html
605b90a2f507c979b91f2be96838dae5 *html/import_prada.html
a71562c1a26fe6c3746c5b75adb04f1a *html/import_soapfuse.html
56328bf8ee65b13479a592cf4edbfa2b *html/import_squid.html
efa5e9320446ad961de98336dde72914 *html/import_starfusion.html
a29714efaffa9af9e2f4c71c6cef7700 *html/partner_gene_ensembl_id.html
fe29bf9ddf5a5c7862482b0f439e207e *html/partner_gene_junction_sequence.html
850705bef9a5470d8ba63077f8294d9f *html/plot_circle.html
3ae4ade5c86e0ad0d7fd3f64f7c9ed9b *html/plot_fusion.html
0319f918b519f17960d723264c0c894e *html/plot_fusion_reads.html
f2a5e18dc78ab5ee903bf2517c011159 *html/plot_fusion_transcript.html
b31e467f9f21fbd6c51fb9483211197f *html/plot_fusion_transcript_with_protein_domain.html
0db94793d577d3ff8ad653fe9bff7cf5 *html/plot_fusion_transcripts_graph.html
3ccbb764762ff1ef6b0653e7385e1975 *html/plot_transcripts.html
b63467e0d1ec73ccaf98e63280bebeac *html/raw_Homo_sapiens.GRCh37.74.html
91f035959d9179d1973b84d357f5ff27 *html/raw_chimpipe.html
f769058bfc0f4258eaf5eb7fb5d1c360 *html/raw_cytobandhg19.html
601f76d13cff1cf31f61459243ef1982 *html/raw_cytobandhg38.html
e563f6f4f8f511efbf004547e64c0261 *html/raw_defuse.html
a0758381d504a6417ced35fb0a9977b1 *html/raw_ericscript.html
b4c05645b914e23bc351df480232db0c *html/raw_fusion5267proteindomains.html
3905a024811349e2384f3571674c3a34 *html/raw_fusion5267reads.html
7ac6355fb1072d30974d47744783e864 *html/raw_fusion5267readsBedGraph.html
9f33ac1878eced09a939e0ed906cfcfd *html/raw_fusioncatcher.html
f51d25622b2302ede4dcd5ae59556afc *html/raw_fusionmap.html
ed4c7890e83f4948d0bf5c65d8efb2ad *html/raw_infusion.html
313df31ae7a6810d051fdffe3ae0ac71 *html/raw_jaffa.html
0cff8dfdca47a6b25419fab2ef4137f2 *html/raw_oncofuse.html
8e3aa2047b9c88629ebebf7a65006662 *html/raw_prada.html
de3477770793590ae7a5fa62ca9567df *html/raw_soapfuse.html
5525e491dea4d830ae55462fee533f76 *html/raw_starfusion.html
5a498551a01b5ffd8a7dd810d6f45518 *html/select_transcript.html
57a879686cdbf1bbb4a5554b15dc02ae *html/show-Fusion-method.html
420006b2d88de4f3ebf5d115a7458977 *html/show-PartnerGene-method.html
d5476fa30d0dc51fad40c3b71b19d023 *html/split_on_utr_and_add_feature.html
24ebcf71984af10abfe708bab4728650 *html/upstream_partner_gene.html
2c5c953c29d977b0830734e340edfbb9 *html/write_fusion_reference.html
15a69578bf401527a8e88625c6995528 *reports/fusionListReport.Rmd
02a805497628487b4b4b19b84cadcded *scripts/bowtie.R
6df03ce33aab21c7d149954ce128b613 *scripts/rsubread.R
