convert_ensembl_to_entrezid
                        convert gene ensembl to entrez id
convert_genesymbols_to_entrezid
                        convert gene symbols to entrez id
cosmos_data             Create Cosmos Data
default_CARNIVAL_options
                        Setting Default CARNIVAL Options
display_node_neighboorhood
                        display_node_neighboorhood
format_COSMOS_res       format_COSMOS_res
load_tf_regulon_dorothea
                        load transcription factor regulon
load_tf_regulon_dorothea_omnipath
                        load_tf_regulon_dorothea_omnipath
meta_network            Meta Prior Knowledge Network
metabolite_to_pubchem   Metabolite-PubChem CID Mapping
omnipath_ptm            OmniPath PTMs
prepare_metabolomics_data
                        format COSMOS metabolic input
preprocess_COSMOS_metabolism_to_signaling
                        Preprocess COSMOS Inputs For Metabolism to
                        Signaling
preprocess_COSMOS_signaling_to_metabolism
                        Preprocess COSMOS Inputs For Signaling to
                        Metabolism
print.cosmos_data       Print Cosmos Data Summary Print a summary of
                        cosmos data.
run_COSMOS_metabolism_to_signaling
                        run COSMOS metabolism to signaling
run_COSMOS_signaling_to_metabolism
                        run COSMOS signaling to metabolism
toy_RNA                 Toy Input Transcription Data Set
toy_metabolic_input     Toy Metabolic Input Data
toy_network             Toy Input Network
toy_signaling_input     Toy Signaling Input
