a7ec78583fc1005ce5b0951f320503a2 *CITATION
feb1e361acf0434ce414330cff0ea6c0 *DESCRIPTION
b0be283bbfa9f629aba0bb5ae20540f0 *INDEX
64486bfac05234704ab3510755c318ff *Meta/Rd.rds
3675e164b9963b99ae047bcd1573da0d *Meta/data.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
bd14a47176017d917ba8ce12f06dd05c *Meta/hsearch.rds
c6b17c9138dd29ae32489c2df06cda0a *Meta/links.rds
57b8f013932024433ef551f778d74d50 *Meta/nsInfo.rds
1c3de705a1b50fddfcb58055aac7ff1f *Meta/package.rds
df5cf6e89d25ad769bcf7197cc1c7db1 *Meta/vignette.rds
2ba9feee5cf8573205622deb5086aa35 *NAMESPACE
d6c68f1fe41ced6e98a766a3757313da *R/tilingArray
1bbb1959db8bd2dc6e33f83ff118c0f5 *R/tilingArray.rdb
2fedf2e836886806ed24e1ae25592d6a *R/tilingArray.rdx
9b06d760239ac24159666af19ce260ea *data/gffSub.rda
2ed3cfc4800c07495b7d190b617c0abd *data/segnf.rda
bff2a2bb302add20e97bb6729bc3d129 *doc/assessNorm.Rnw
ab1404c3310b20953488ce09ac6904c8 *doc/assessNorm.pdf
4f73805f4284d4ad9eace7b5bc526bd4 *doc/costMatrix.Rnw
763bc77e947e6e97c95684d924f76004 *doc/costMatrix.pdf
7eadffc30dae66a4d2ae212fc619c4b3 *doc/findsegments.R
97395bcc96ddf8f9d3c6f6a7d3942be4 *doc/findsegments.Rnw
0b229da62c5daf9098579a8bbe571b27 *doc/findsegments.pdf
2b3c6338e2849827dc2645c1d1deb635 *doc/index.html
4a70585fec95a18aea999802628b0bb4 *doc/plotAlongChrom.R
27e694b0b80e8ac9eadd67a5380c3a8f *doc/plotAlongChrom.Rnw
bdd5afd96f1e19d56e1626e1d1fb58d1 *doc/plotAlongChrom.pdf
9945e32940859c31e359996b9d59ac13 *doc/segmentation.Rnw
356af74d08fa6b3642a5f169d6c61341 *doc/segmentation.pdf
02014379f90d9529c56abcf00a344d8e *help/AnIndex
3d7b5a67856137ebe4e8b1a3072f5a46 *help/BGindex.html
3d7b5a67856137ebe4e8b1a3072f5a46 *help/PMindex.html
a4de53736ad90763f74c9af319dbdbbd *help/aliases.rds
d8feb9e51bcf7db595c0040c8dad3432 *help/breakpoints.breakpointsPretend.html
d8feb9e51bcf7db595c0040c8dad3432 *help/breakpointsPretend.html
c381a0c3b96baf68c9f0f498be84c9e4 *help/class-segmentation.html
9a69a25b40e197198f3c832f5a8aa936 *help/comparisonPlot.html
c381a0c3b96baf68c9f0f498be84c9e4 *help/confint,segmentation-method.html
c381a0c3b96baf68c9f0f498be84c9e4 *help/confint.html
8ef6768dfcdc4dde3c6ec6c393a7b32a *help/costMatrix.html
75f16e1f9a63017ccf674bc6fe6d205e *help/findSegments.html
56fbef576c29dc8ffe4ece9cb3fb42e7 *help/gffSub.html
c381a0c3b96baf68c9f0f498be84c9e4 *help/logLik,segmentation-method.html
c381a0c3b96baf68c9f0f498be84c9e4 *help/logLik.html
71543234d1b949babc4e78b9a1c45009 *help/normalizeByReference.html
d5b5dd3bb59c35a7b76ba1c14cea69ca *help/otherStrand.html
0459becdf9c92cec6321cdf187961df3 *help/paths.rds
c381a0c3b96baf68c9f0f498be84c9e4 *help/plot,segmentation,ANY-method.html
f55305f0b6ac2d5550f696d97d3b3a5e *help/plotAlongChrom.html
5c2d74401e3e422a514917668e58f809 *help/plotAlongChromLegend.html
ef2fe6849a27745ad8ea8ddbffd5466d *help/plotFeatures.html
dc24280e298c0e92262b2f19948ac27f *help/plotPenLL.html
16dd6554400e998004f7ff50e50f66a1 *help/plotSegmentationDots.html
6af2f5ed3b92fd6d54ea391f815faff1 *help/plotSegmentationHeatmap.html
ca444319525b92a3a846880d1bf0deeb *help/posMin.html
a8e442603601bc29f23b6cf291b4555d *help/qcPlots.html
20d5888f46d2017f6bd53e2dd0f4fb49 *help/readCel2eSet.html
d8feb9e51bcf7db595c0040c8dad3432 *help/residuals.breakpointsPretend.html
58e9746cdc8e4b7537a9870d526ce75a *help/sampleStep.html
913c3401d9f821bfd29194e1187557d6 *help/segChrom.html
a8bca042ca67ffb8ab6ae5371c668d78 *help/segment.html
c381a0c3b96baf68c9f0f498be84c9e4 *help/segmentation-class.html
4b75647f7b09ef7fe55060f3dcc4ab97 *help/segnf.html
c381a0c3b96baf68c9f0f498be84c9e4 *help/show,segmentation-method.html
5c35df7c09f15be7c4d171e7a0372bc3 *help/tilingArray-package.html
5c35df7c09f15be7c4d171e7a0372bc3 *help/tilingArray.html
b99818e1c2ac81f3e884531b4977796f *help/tilingArray.rdb
e4bbe4d9399abcfbf4a760791af7172a *help/tilingArray.rdx
79a53ebab1cf465b0d512b944621933e *html/00Index.html
10275c39e1a9fc5815babc890c8686a2 *html/PMindex.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
69745d0c02b2b5707ced76c7df6119ed *html/breakpointsPretend.html
32d8544c02df6f65a5ab68f74bbffa46 *html/class-segmentation.html
69a26ed70e404da3b378d8c8fc656d37 *html/comparisonPlot.html
291a625606f780a52ce23d240175f702 *html/costMatrix.html
0158673ee0ad1aeff676142eed889d59 *html/findsegments.html
87d4f646bedbe54329b913892f75300c *html/gffSub.html
116718cc6f71cb6996b38da8465680e7 *html/normalizeByReference.html
62162461b00fd3c664d80654917a2ad1 *html/otherStrand.html
74273563fcab86ff81905131ab2270ff *html/plotAlongChrom.html
85cc1e7129bfb55ed3ca5e5be1726f36 *html/plotAlongChromLegend.html
635c46ebf24a3260bf9b3fb95299c488 *html/plotFeatures.html
aef9b5c04b9289baaa1b70eb86eb0bc1 *html/plotSegmentationDots.html
ae5e8099199a8637e5fda49253dc0703 *html/plotSegmentationHeatmap.html
37ae8e3e872d4b40ec4dc41ed65513eb *html/plotpenLL.html
a554d1071bbad58dbce47e2f02d1f76b *html/posMin.html
cec8a3dcef548175632d4e5ab241bdce *html/qcPlots.html
5b0235c86e5ceb88b8015ebebe05b0f8 *html/readCel2eSet.html
9cf434cd18ed18c4904f95ee2d97b185 *html/sampleStep.html
95a5deb921c5eb5e297fb7ced2d9ba80 *html/segChrom.html
d97ee68ec4a04749946c07f9f613edcf *html/segment.html
4157c23528633d16b9a1671234ca526c *html/segnf.html
f88008203feff162c1f24b9bafeb4c94 *html/tilingArray-package.html
7c2276b690ca0dca3ae709ef04079cc1 *libs/i386/tilingArray.dll
2a303e59ddd3a30fc403fe12b9df5e3e *libs/x64/tilingArray.dll
a7912dfd42b098d5deb89b2d9cc34c6b *scripts/createNormIntensitiesFlatfile.R
852148e648462836aa26fb1eb0416446 *scripts/marina.R
b489f3cb57fd3c93fcec128e469df226 *scripts/segVariance.Rnw
4aa4bd3d6bd0f1aa2b8084954f502000 *scripts/testSegmentationConfint.R
02c6bbe5626aea34e59f09046739758f *vignettes/assessNorm.Rnw
ab1404c3310b20953488ce09ac6904c8 *vignettes/assessNorm.pdf
b3ac4fee6048750775b9397275043098 *vignettes/segmentation.Rnw
356af74d08fa6b3642a5f169d6c61341 *vignettes/segmentation.pdf
