CRImage a package to classify cells and calculate tumour cellularity


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Documentation for package ‘CRImage’ version 1.42.0

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CRImage-package CRImage is a package to analyze images and classify cells.
calculateCellularity Calculation of tumour cellularity
calculateMeanStdTarget Calculates Mean and Standard deviation of an image
calculateOtsu Does Otsu thresholding
classifyCells A function to classify cells
colorCorrection Color transfer between images.
convertHSVToRGB Conversion from HSV color space to RGB color space
convertLABToRGB Conversion of LAB colour space to RGB colour space
convertRGBToHSV Conversion from RGB color space to HSV color space
convertRGBToLAB Converts RGB to LAB color space.
correctCopyNumber Allelic Copy Number correction for cellularity
createBinaryImage Thresholding
createClassifier Construction of a classifier
CRImage CRImage is a package to analyze images and classify cells.
labelCells Interactive Session for cell labeling
plotCorrectedCN Plot CN profiles corrected for cellularity
processAperio Cellularity Calculation of Aperio TX Scanner
SauvolaThreshold Do Sauvola thresholding
segmentImage Segmentation of an image