DTA-package |
Dynamic Transcriptome Analysis |
Dm.tnumber |
The amount of thymines in the cDNA of each transcript of Drosophila Melanogaster. |
Doelken2008 |
Mus Musculus and Homo Sapiens DTA experiment from Doelken et al. |
DTA |
Dynamic Transcriptome Analysis |
DTA.dynamic.estimate |
Estimation of synthesis and decay rates upon perturbation |
DTA.dynamic.generate |
Simulation of DTA experiments upon perturbation |
DTA.estimate |
Estimation of synthesis and decay rates |
DTA.generate |
Simulation of DTA experiments |
DTA.map.it |
Mapping function to switch between different identifiers. |
DTA.normalize |
cDTA normalization procedure. |
DTA.phenomat |
Create a phenomat that suits your experiment. |
DTA.plot.it |
Plots in any format and any quality |
Hs.datamat |
Gene expression profiles of the Homo Sapiens DTA experiment from Doelken et al. |
Hs.enst2ensg |
Mapping of Homo Sapiens gene and transcript identifiers. |
Hs.phenomat |
Design of the Homo Sapiens DTA experiment from Doelken et al. |
Hs.reliable |
Gene identifiers valid for parameter estimation from the Homo Sapiens Doelken et al. DTA experiment. |
Hs.tnumber |
The amount of thymines in the cDNA of each transcript of Homo Sapiens. |
Miller2011 |
Saccharomyces Cerevisiae wild-type DTA experiment from Miller et al. |
Miller2011dynamic |
Saccharomyces Cerevisiae salt stress DTA experiment from Miller et al. |
Mm.datamat |
Gene expression profiles of the Mus Musculus DTA experiment from Doelken et al. |
Mm.enst2ensg |
Mapping of Mus Musculus gene and transcript identifiers. |
Mm.phenomat |
Design of the Mus Musculus DTA experiment from Doelken et al. |
Mm.reliable |
Gene identifiers valid for parameter estimation from the Mus Musculus Doelken et al. DTA experiment. |
Mm.tnumber |
The amount of thymines in the cDNA of each transcript of Mus Musculus. |
Pol.phenomat |
Design of the Saccharomyces Cerevisiae rpb1-N488D (Slow Polymerase) cDTA experiment from Sun et al. |
Raw.datamat |
Gene expression profiles of the Saccharomyces Cerevisiae rpb1-N488D (Slow Polymerase) and wild-type cDTA experiment from Sun et al. |
Sc.affy2ensg |
Mapping of SaccharomycesCerevisiae Affymetrix Yeast 2.0 and gene identifiers. |
Sc.datamat |
Gene expression profiles of the Saccharomyces Cerevisiae wild-type DTA experiment from Miller et al. |
Sc.datamat.dynamic |
Gene expression profiles of the Saccharomyces Cerevisiae salt stress DTA experiment from Miller et al. |
Sc.ensg.reliable |
Gene identifiers valid for parameter estimation from the Saccharomyces Cerevisiae Sun et al. cDTA experiment. |
Sc.phenomat |
Design of the Saccharomyces Cerevisiae wild-type DTA experiment from Miller et al. |
Sc.phenomat.dynamic |
Design of the Saccharomyces Cerevisiae salt stress DTA experiment from Miller et al. |
Sc.reliable |
Gene identifiers valid for parameter estimation from the Saccharomyces Cerevisiae Miller et al. wild-type DTA experiment. |
Sc.reliable.dynamic |
Gene identifiers valid for parameter estimation from the Saccharomyces Cerevisiae Miller et al. salt stress DTA experiment. |
Sc.ribig.ensg |
Ribosome biogenesis genes. |
Sc.rpg.ensg |
Ribosomal protein genes. |
Sc.stress.ensg |
ISA stress module. |
Sc.tf.ensg |
Transcription factors. |
Sc.tnumber |
The amount of thymines in the cDNA of each transcript of Saccharomyces Cerevisiae. |
Sp.affy.reliable |
Gene identifiers valid for cDTA normalization from the Saccharomyces Cerevisiae Sun et al. cDTA experiment. |
Sp.tnumber |
The amount of thymines in the cDNA of each transcript of Schizosaccharomyces Pombe. |
Sun2011 |
Saccharomyces Cerevisiae rpb1-N488D (Slow Polymerase) and wild-type cDTA experiment from Sun et al. |
tls |
Weighted Total Least Square Regression. |
Wt.phenomat |
Design of the Saccharomyces Cerevisiae wild-type cDTA experiment from Sun et al. |