Normalization of single cell RNA-seq data


[Up] [Top]

Documentation for package ‘SCnorm’ version 1.16.0

Help Pages

correctWithin correctWithin
evaluateK Evaluate normalization using K slope groups
ExampleSimSCData Example datasets for SCnorm
generateEvalPlot Internal plotting function.
getCounts getCounts
getDens getDens
getSlopes Estimate gene specific count-depth relationships
GetTD Fit group regression for specific quantile and degree
normWrapper Iteratively fit group regression and evaluate to choose optimal K
plotCountDepth Evaluate the count-depth relationship before (or after) normalizing the data.
plotWithinFactor Evaluate gene-specific factors in the the data.
quickReg quickReg
redoBox redoBox
results results
scaleNormMultCont Scale multiple conditions
SCnorm SCnorm
SCnormFit Fit group quantile regression for K groups
splitGroups splitGroups