sangeranalyseR: a suite of functions for the analysis of Sanger sequence data in R
Documentation for package ‘sangeranalyseR’ version 1.4.0
DESCRIPTION file
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User guides, package vignettes and other documentation.
Package NEWS
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ChromatogramParam-class
ChromatogramParam
generateReport
Method generateReport
generateReportSA
Method generateReportSA
generateReportSA-method
generateReportSA
generateReportSC
Method generateReportSC
generateReportSC-method
generateReportSC
generateReportSR
Method generateReportSR
generateReportSR-method
generateReportSR
launchApp
Method launchApp
launchAppSA
Method launchAppSA
launchAppSA-method
launchAppSA
launchAppSC
Method launchAppSC
launchAppSC-method
launchAppSC
MakeBaseCalls
Method MakeBaseCalls
MakeBaseCalls-method
MakeBaseCalls
ObjectResults-class
ObjectResults
qualityBasePlot
Method qualityBasePlot
qualityBasePlot-method
qualityBasePlot
qualityBasePlot-method
qualityBasePlot
QualityReport-class
QualityReport
QualityReport-class-qualityBasePlot
qualityBasePlot
QualityReport-class-updateQualityParam
updateQualityParam
qualityReportData
QualityReport instance
readTable
Method readTable
readTable-method
readTable
readTable-method
readTable
SangerAlignment
SangerAlignment
SangerAlignment-class
SangerAlignment
SangerAlignment-class-generateReportSA
generateReportSA
SangerAlignment-class-launchAppSA
launchAppSA
SangerAlignment-class-updateQualityParam
updateQualityParam
SangerAlignment-class-writeFastaSA
writeFastaSA
sangerAlignmentData
SangerAlignment instance
sangeranalyseR
sangeranalyseR-package
SangerContig
SangerContig
SangerContig-class
SangerContig
SangerContig-class-generateReportSC
generateReportSC
SangerContig-class-launchAppSC
launchAppSC
SangerContig-class-readTable
readTable
SangerContig-class-updateQualityParam
updateQualityParam
SangerContig-class-writeFastaSC
writeFastaSC
sangerContigData
SangerContig instance
SangerRead
SangerRead
SangerRead-class
SangerRead
SangerRead-class-generateReportSR
generateReportSR
SangerRead-class-MakeBaseCalls
MakeBaseCalls
SangerRead-class-qualityBasePlot
qualityBasePlot
SangerRead-class-readTable
readTable
SangerRead-class-updateQualityParam
updateQualityParam
SangerRead-class-writeFastaSR
writeFastaSR
sangerReadFData
SangerRead instance
updateQualityParam
Method updateQualityParam
updateQualityParam-method
updateQualityParam
updateQualityParam-method
updateQualityParam
updateQualityParam-method
updateQualityParam
updateQualityParam-method
updateQualityParam
writeFasta
Method writeFasta
writeFastaSA
Method writeFastaSA
writeFastaSA-method
writeFastaSA
writeFastaSC
Method writeFastaSC
writeFastaSC-method
writeFastaSC
writeFastaSR
Method writeFastaSR
writeFastaSR-method
writeFastaSR