CB2 improves power of cell detection in droplet-based single-cell RNA sequencing data


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Documentation for package ‘scCB2’ version 1.4.0

Help Pages

CB2FindCell Main function of distinguish real cells from empty droplets using clustering-based Monte-Carlo test
FilterGB Filter out low count genes and barcodes from count matrix
GetCellMat Extract real cell matrix from 'CB2FindCell' output and optionally filter out low-quality cells
mbrainSub Subset of 1k Brain Cells from an E18 Mouse
QuickCB2 All-in-one function from raw data to filtered cell matrix
Read10xRaw Read 10x output data
Read10xRawH5 Read 10x output data