objectsampletotemplate {ACE} | R Documentation

## Converts data of a sample in a QDNAseq-object to a template for ACE functions

### Description

`objectsampletotemplate` parses QDNAseq-objects into the data frame structure used by various ACE functions. These functions call objectsampletotemplate itself when necessary, but it might be convenient to make a template if you expect some repeated use of the functions or if you want to make manual adjustments to the template.

### Usage

    objectsampletotemplate(copyNumbersSegmented, index = 1)

### Arguments

`copyNumbersSegmented` | QDNAseqCopyNumbers object with segmented data
`index` | Integer. Specifies the index of the sample

### Value

Returns a template data frame with the columns bin, chromosome, copynumbers, and segments (when available)

### Note

If segment values are missing, the function will still return a data frame, but only containing the copynumbers column, not the segments column

### Author(s)

Jos B. Poell

### See Also

`singlemodel`, `squaremodel`, `singleplot`

### Examples

    data("copyNumbersSegmented")
    template <- objectsampletotemplate(copyNumbersSegmented, index = 1)

[Package ACE version 1.12.0 Index]