baseline_expression_values {BUSseq} | R Documentation

## Obtain the Log-Scale Baseline Expression Levels from the Output of the `BUSseq_MCMC` Function

### Description

The function gives the estimated log-scale baseline expression levels from the output `SingleCellExperiment` object.

### Usage

    baseline_expression_values(sce_BUSseqfit)

### Arguments

`sce_BUSseqfit` | An output `SingleCellExperiment` object by the function `BUSseq_MCMC`.

### Value

`alpha.est` | The estimated log-scale baseline expression levels, a G-dimensional vector whose g-th element is the estimated log-scale mean gene expression level of gene g in the first cell type.

### Author(s)

Fangda Song

### References

Song, Fangda, Ga Ming Angus Chan, and Yingying Wei. Flexible experimental designs for valid single-cell RNA-sequencing experiments allowing batch effects correction. Nature communications 11, no. 1 (2020): 1-15.

### Examples

    # "BUSseqfits_example" is an example output
    BUSseqfits_example
    alpha.est <- baseline_expression_values(BUSseqfits_example)

[Package BUSseq version 1.0.0 Index]