intrinsic_genes_BUSseq {BUSseq} | R Documentation

## Obtain the Intrinsic Gene Indicators from the Output of the `BUSseq_MCMC` Function

### Description

The function gives the estimated intrinsic gene indicators in the output `SingleCellExperiment` object.

### Usage

    intrinsic_genes_BUSseq(sce_BUSseqfit)

### Arguments

`sce_BUSseqfit` | An output `SingleCellExperiment` object obtained from the function `BUSseq_MCMC`.

### Value

`intrinsic_genes` | A vector indicating whether a gene is intrinsic or not.

### Author(s)

Fangda Song

### References

Song, Fangda, Ga Ming Angus Chan, and Yingying Wei. Flexible experimental designs for valid single-cell RNA-sequencing experiments allowing batch effects correction. Nature communications 11, no. 1 (2020): 1-15.

### Examples

    # "BUSseqfits_example" is an example output
    BUSseqfits_example
    intri_genes <- intrinsic_genes_BUSseq(BUSseqfits_example)

[Package BUSseq version 1.0.0 Index]