imputed_read_counts {BUSseq} | R Documentation

## Obtain the Imputed Read Count Matrix from the Output of the `BUSseq_MCMC` Function

### Description

The function gives the imputed read counts in the output `SingleCellExperiment` object.

### Usage

      imputed_read_counts(sce_BUSseqfit)

### Arguments

`sce_BUSseqfit` | An output `SingleCellExperiment` object obtained from the function `BUSseq_MCMC`.

### Value

`CountData_imputed` | The imputed read counts, a `CountData` object with length equal to the batch number. Each element is a read count matrix for a specific batch, where each row corresponds to a gene and each column represents a cell.

### Author(s)

Fangda Song

### References

Song, Fangda, Ga Ming Angus Chan, and Yingying Wei. Flexible experimental designs for valid single-cell RNA-sequencing experiments allowing batch effects correction. Nature communications 11, no. 1 (2020): 1-15.

### Examples

    # "BUSseqfits_example" is an example output
    library(SingleCellExperiment)
    BUSseqfits_example
    Example_CountData_imputed <- imputed_read_counts(BUSseqfits_example)

[Package BUSseq version 1.0.0 Index]