dropout_coefficient_values {BUSseq} | R Documentation

## Obtain the Coefficients of the Logistic Regression for the Dropout Events from the Output of the `BUSseq_MCMC` Function

### Description

The function gives the intercept and odds ratio of the logistic regression for dropout events in the output `SingleCellExperiment` object.

### Usage

    dropout_coefficient_values(sce_BUSseqfit)

### Arguments

`sce_BUSseqfit` | An output `SingleCellExperiment` object by the function `BUSseq_MCMC`.

### Value

`gamma.est` | The estimated intercept and log ratio of the logistic regression for dropout events, a 2-diminsional vector.

### Author(s)

Fangda Song

### References

Song, Fangda, Ga Ming Angus Chan, and Yingying Wei. Flexible experimental designs for valid single-cell RNA-sequencing experiments allowing batch effects correction. Nature communications 11, no. 1 (2020): 1-15.

### Examples

    # "BUSseqfits_example" is an example output
    BUSseqfits_example
    gamma.est <- dropout_coefficient_values(BUSseqfits_example)

[Package BUSseq version 1.0.0 Index]