6e204347f7003f430bb777db91735988 *DESCRIPTION
c6dcd6052f07d5044a778fdf18f98fe3 *INDEX
80254bda3298765e4d2bae216f73f677 *Meta/Rd.rds
8503e676975364d771072956cdbca633 *Meta/features.rds
3555393867e9c4167015783feb6b4344 *Meta/hsearch.rds
906b6f04d3f95cf930e3be82a487cd20 *Meta/links.rds
b990781716a7ccca5d8fa3862de0f7e3 *Meta/nsInfo.rds
22c7498caaecffb6d481e7073ddc4105 *Meta/package.rds
0f222b663850a72bf20932a647575d71 *Meta/vignette.rds
ef03bbed8aeb3fc056d8b98bead255b7 *NAMESPACE
d41d8cd98f00b204e9800998ecf8427e *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/BadRegionFinder
febbdfb47179c705a87f4aca700e3802 *R/BadRegionFinder.rdb
066cb09b60308911b9cc546dbdf760be *R/BadRegionFinder.rdx
6514da9bf9246ba7ce9d717714248320 *doc/BadRegionFinder.R
1e06b02952fdc753cf8770c4b8fee6c2 *doc/BadRegionFinder.Rnw
80eefc9fa4b0bdca97473e70574dd5bc *doc/BadRegionFinder.pdf
162241ee389d58bead070e87bb77d8a0 *doc/index.html
57260012704b57257d5e6554a899b473 *extdata/SampleNames.txt
b6dd0d7deabffe903a0cc6d48f8f0128 *extdata/SampleNames2.txt
311ac38889571141dcfc76b7549f686a *extdata/Test2_454.bai
55e48d8f4ad9831a652beffd8852019c *extdata/Test2_454.bam
b11b1fb6c73b5fd36f06601ba89ed130 *extdata/Test2_ion.bai
dfaeb4e7b5bfefd8d92420e9d8f87bd5 *extdata/Test2_ion.bam
1fd740102290e22f9375f392ddc9df28 *extdata/Test_454.bai
72dc73efbaaa4a432bcab90d4e2505a5 *extdata/Test_454.bam
5c3e3802075486ba31f35095078129e4 *extdata/Test_ion.bai
fb7395262ecc389ae2d8747074d1f269 *extdata/Test_ion.bam
72edc63cbd18548ad0441b76804b0bc2 *extdata/regionsOfInterest.bed
3b58e22463ee181a5165b065ff312540 *extdata/targetRegions.bed
482b755ffc5ba91f265360309aab880a *extdata/targetRegions2.bed
bb19315e2a63a27c8de2574fbe790375 *help/AnIndex
4ce50a05075e755341fdeb509ead79b8 *help/Bad+20Coverage.html
4ce50a05075e755341fdeb509ead79b8 *help/BadRegionFinder-package.html
4ce50a05075e755341fdeb509ead79b8 *help/BadRegionFinder.html
ec7a8b8b6f8bfe57dbb6035cd482cd58 *help/BadRegionFinder.rdb
35cfbb248f5c603f01a085cfe0fe2e79 *help/BadRegionFinder.rdx
4ce50a05075e755341fdeb509ead79b8 *help/Coverage+20Classifier.html
da56102a69e8b2be5203727323bde089 *help/aliases.rds
2229bf32059ade3ffce8cdac844e1ab7 *help/determine+20Coverage+20Quality.html
670950046107ba2cdb71897e82f49c33 *help/determine+20Quantiles.html
4f6d97934a0aec48ab14eb5e7a432f5f *help/determine+20Regions+20Of+20Interest.html
5cf86d69ab7f2a2c8b239ce8d710028b *help/determineCoverage.html
2229bf32059ade3ffce8cdac844e1ab7 *help/determineCoverageQuality.html
670950046107ba2cdb71897e82f49c33 *help/determineQuantiles.html
4f6d97934a0aec48ab14eb5e7a432f5f *help/determineRegionsOfInterest.html
0d266d8ea96062d5efee9f1e462a4239 *help/paths.rds
0f4de3dbeea1d5926d1bbd90f459dcd1 *help/plot+20Detailed.html
f1c92fa05c0db5054d81f54a844a7986 *help/plot+20Summary+20Genes.html
edc79b6a9ccce7974177b87609092d1f *help/plot+20Summary.html
0f4de3dbeea1d5926d1bbd90f459dcd1 *help/plotDetailed.html
edc79b6a9ccce7974177b87609092d1f *help/plotSummary.html
f1c92fa05c0db5054d81f54a844a7986 *help/plotSummaryGenes.html
e4bcec6c05a866691109aeb0f0dea0e2 *help/report+20Bad+20Regions+20Detailed.html
a3f8c75387485a1e1927a7d8457ce300 *help/report+20Bad+20Regions+20Genes.html
7780fd649c0ac7a1139549b253b60ad0 *help/report+20Bad+20Regions+20Summary.html
e4bcec6c05a866691109aeb0f0dea0e2 *help/reportBadRegionsDetailed.html
a3f8c75387485a1e1927a7d8457ce300 *help/reportBadRegionsGenes.html
7780fd649c0ac7a1139549b253b60ad0 *help/reportBadRegionsSummary.html
0d47959e888d930ee16a4dfc977707f7 *html/00Index.html
a4a6fcf7f47d09f76072526192d82104 *html/BadRegionFinder-package.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
dec3752ad88cd570c99ef782fe0c0dff *html/determineCoverage.html
c5667c7e15db49c6bd903b369c5c5ad3 *html/determineCoverageQuality.html
2ad0847d85cfdd61c349a0a8378cfb67 *html/determineQuantiles.html
75b81dcf61dea4b3c231e1608d58e5a6 *html/determineRegionsOfInterest.html
01a04ff215a63073c895a1f314d3fc30 *html/plotDetailed.html
6801a0c2d4927768bc48826ed878a60d *html/plotSummary.html
ef5d2c3009ed0de4c0931faf92880d63 *html/plotSummaryGenes.html
5dba9e520ba6893c05f57df52bbcc8c5 *html/reportBadRegionsDetailed.html
8a10c0f26cd6a9d0e7c1567e20c90dd9 *html/reportBadRegionsGenes.html
6a6db744c5c01e0c5af56a2254399a84 *html/reportBadRegionsSummary.html
