# Brain Span Atlas in Biobase Expressionset R toolset

## Documentation for package ‘BrainSABER’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

.CellScabbard | The CellScabbard class
AIBSARNAid | Methods for the CellScabbard class
AIBSARNAid<- | Methods for the CellScabbard class
buildAIBSARNA | Function to create a SummarizedExperiment containing BrainSpan Data
CellScabbard | The CellScabbard class
CellScabbard-class | The CellScabbard class
CellScabbard-method | Methods for the CellScabbard class
CellScabbard-methods | Methods for the CellScabbard class
dataSetId | Methods for the CellScabbard class
dataSetId<- | Methods for the CellScabbard class
getExampleVector | Get an example vector for specified genes
getExternalVector | getExternalVector
getRelevantGenes | Get a subset of AIBSARNA using a Gene Expression Vector
getSimDataFrame | Get Age, Structure Acronym, and Similarity Scores Data Frame
getSimMatrix | Get Age, Structure Acronym, and Similarity Score Matrix
getSimScores | Get Similarity Scoring for a Gene Expression Vector
getTrimmedExternalSet | Get a trimmed version of an external data set
getUNDmatrix | getUNDmatrix
relevantGenes | Methods for the CellScabbard class
relevantGenes<- | Methods for the CellScabbard class
runShinyBrainSABER | ShinyBrainSABER
similarityDFs | Methods for the CellScabbard class
similarityDFs<- | Methods for the CellScabbard class
similarityMatrices | Methods for the CellScabbard class
similarityMatrices<- | Methods for the CellScabbard class
similarityScores | Methods for the CellScabbard class
similarityScores<- | Methods for the CellScabbard class
UNDmatrices | Methods for the CellScabbard class
UNDmatrices<- | Methods for the CellScabbard class