swapScores {CAGEfightR} | R Documentation

## Swap scores in SummarizedExperiment

### Description

Take scores for a specific sample and a specific assay and put them into rowData.

### Usage

    swapScores(object, outputColumn = "score", inputAssay, sample)

### Arguments

`object` | SummarizedExperiment: CAGE-data
`outputColumn` | character: Column in rowData to to hold swapped in scores.
`inputAssay` | character: Name of assay to take scores from.
`sample` | character: Name of sample to take scores from.

### Value

SummarizedExperiment with sample scores from inputAssay in rowRata.

### See Also

Other Swapping functions: `swapRanges()`

### Examples

    data(exampleCTSSs)
    sample_names <- colnames(exampleCTSSs)

    # Replace scores with values from the first sample:
    x <- swapScores(exampleCTSSs, inputAssay='counts', sample=sample_names[1])
    rowRanges(x)

[Package CAGEfightR version 1.14.0 Index]