visualizeResults {CHRONOS} | R Documentation

## Visualize results in tabular form (txt, xlsx)

### Description

Visualize results in tabular form (txt, xlsx)

### Usage

    visualizeResults(summary, export, expand, colors, from, to)

### Arguments

`summary` | Evaluation results as returned from `scoreSubpathways`
`export` | '.xlsx' exports a xlsx file and '.txt' a .txt file.
`expand` | TRUE if each subpathway member and miRNA belongs to a single cell, FALSE if all subpathway members belong to one cell and miRNAs to another cell.
`colors` | The color scheme used in subScores heatmap.
`from` | Primary annotation `convertNomenclature`. Defaults to EntrezGene ID.
`to` | Secondary annotation `convertNomenclature`

### Value

A txt or a xlsx file in CHRONOS/extdata/Output/Scores/Linear/<org>
or CHRONOS/extdata/Output/Scores/Non-Linear/<org>

### Examples

    # Load scored subpathways from toy data
    load(system.file('extdata', 'Examples//data.RData', package='CHRONOS'))

    visualizeResults(linSubsScored, export='txt')

[Package CHRONOS version 1.22.0 Index]