dataset_preprocessing {CIMICE} | R Documentation

## Run CIMICE preprocessing

### Description

executes the preprocessing steps of CIMICE

### Usage

    dataset_preprocessing(dataset)

### Arguments

`dataset` | a mutational matrix as a (sparse) matrix

### Details

Preprocessing steps:

1) dataset is compacted

2) genotype frequencies are computed

3) labels are prepared

### Value

a list containing the mutational matrix ("samples"), the mutational frequencies of the genotypes ("freqs"), the node labels ("labels") and finally the gene names ("genes")

### Examples

    require(dplyr)
    example_dataset() %>% dataset_preprocessing

[Package CIMICE version 1.2.1 Index]