read_MAF {CIMICE} | R Documentation

## Create mutational matrix from MAF file

### Description

Read a MAF (Mutation Annotation Format) file and create a Mutational Matrix combining gene and sample IDs.

### Usage

    read_MAF(path, ...)

### Arguments

`path` | path to MAF file
`...` | other maftools::mutCountMatrix arguments

### Value

the mutational (sparse) matrix associated to the MAF file

### Examples

    read_MAF(system.file("extdata", "paac_jhu_2014_500.maf", package = "CIMICE", mustWork = TRUE))

[Package CIMICE version 1.2.1 Index]