dataset_preprocessing_population {CIMICE} | R Documentation

## Run CIMICE preprocessing for poulation format dataset

### Description

executes the preprocessing steps of CIMICE

### Usage

    dataset_preprocessing_population(compactedDataset)

### Arguments

`compactedDataset` | a list (matrix: a mutational matrix, counts: number of samples with given genotype). "counts" is normalized automatically.

### Details

Preprocessing steps:

1) genotype frequencies are computed

2) labels are prepared

### Value

a list containing the mutational matrix ("samples"), the mutational frequencies of the genotypes ("freqs"), the node labels ("labels") and finally the gene names ("genes")

### Examples

    require(dplyr)
    example_dataset_withFreqs() %>% dataset_preprocessing_population

[Package CIMICE version 1.2.1 Index]