graph_non_transitive_subset_topology {CIMICE} | R Documentation

## Default preparation of graph topology

### Description

By default, CIMICE computes the relation between genotypes using the subset relation. For the following steps it is also important that the transitive edges are removed.

### Usage

    graph_non_transitive_subset_topology(samples, labels)

### Arguments

`samples` | mutational matrix
`labels` | genotype labels

### Value

a graph with the wanted topology

### Examples

    require(dplyr)
    preproc <- example_dataset() %>% dataset_preprocessing
    samples <- preproc[["samples"]]
    freqs   <- preproc[["freqs"]]
    labels  <- preproc[["labels"]]
    genes   <- preproc[["genes"]]
    graph_non_transitive_subset_topology(samples, labels)

[Package CIMICE version 1.2.1 Index]