netConditionsPlot {CeTF} | R Documentation

## Network plot of gene-gene/gene-TFs interactions

### Description

Generate the network plot of gene-gene/gene-TFs interactions for both conditions.

### Usage

    netConditionsPlot(x)

### Arguments

`x` | CeTF object resulted from `runAnalysis` function.

### Value

Returns the network plot for both conditions.

### Examples

    # loading a simulated counts data
    data('simCounts')

    # performing runAnalysis function
    out <- runAnalysis(mat = simCounts,
                       conditions=c('cond1', 'cond2'),
                       lfc = 3,
                       padj = 0.05,
                       TFs = paste0('TF_', 1:1000),
                       nSamples1 = 10,
                       nSamples2= 10,
                       tolType = 'mean',
                       diffMethod = 'Reverter',
                       data.type = 'counts')

    # plotting networks conditions
    netConditionsPlot(out)

[Package CeTF version 1.6.0 Index]