RIFPlot {CeTF} | R Documentation

## Relationship plots between RIF1, RIF2 and DE genes

### Description

Generate plots for the relationship between the RIF output analysis (RIF1 and RIF2) and for differentially expressed genes (DE).

### Usage

    RIFPlot(object, color = "darkblue", type = "RIF")

### Arguments

`object` | CeTF object resulted from `runAnalysis` function.
`color` | Color of points (default: darkblue)
`type` | Type of plot. The available options are: RIF or DE (default: RIF)

### Details

This function can only be used after using the `runAnalysis` function as it uses the CeTF class object as input.

### Value

Returns a relationship plot between RIF1 and RIF2 or a plot with the relationship between RIF1 or RIF2 with DE genes.

### Examples

    # load the CeTF class object resulted from runAnalysis function
    data(CeTFdemo)

    # performing RIFPlot for RIF
    RIFPlot(object = CeTFdemo,
            color  = 'darkblue',
            type   = 'RIF')

    # performing RIFPlot for DE
    RIFPlot(object = CeTFdemo,
            color  = 'darkblue',
            type   = 'DE')

[Package CeTF version 1.6.0 Index]