CeTF-class {CeTF} | R Documentation

## The CeTF Class

### Description

The CeTF class is data storage class that stores all the results from `runAnalysis` function.

### Value

Returns an CeTF object.

### Slots

`Data`

  Includes the raw, tpm and norm (see `normExp`) data.

`DE`

  Includes the uniquely differentially expressed genes/TFs and the statistics for all genes (see `expDiff`).

`Input`

  Includes input matrices for RIF (see `RIF`) and PCIT (see `PCIT`) for both conditions in `runAnalysis` function analysis.

`Output`

  Includes the matrix output from RIF analysis (see `RIF`) and a matrix with PCIT output, and other two matrix with raw and significant adjacency (see `PCIT`) for both conditions inside of `runAnalysis` function analysis.

`Network`

  Network with Gene-Gene and Gene-TF interactions for both conditions (see `PCIT`), main TFs resulted from the complete analysis, all the TFs identified in the input data and matrix annotating all genes and TFs.

[Package CeTF version 1.6.0 Index]