clustCoef {CeTF} | R Documentation

## Calculate the clustering coefficient

### Description

Calculate the clustering coefficient for an adjacency matrix.

### Usage

    clustCoef(mat)

### Arguments

`mat` | An adjacency matrix. Calculating the clustering coefficient only makes sense if some connections are zero i.e. no connection.

### Value

Returns the clustering coefficient(s) for the adjacency matrix.

### References

Nathan S. Watson-Haigh, Haja N. Kadarmideen, and Antonio Reverter (2010). PCIT: an R package for weighted gene co-expression networks based on partial correlation and information theory approaches. Bioinformatics. 26(3) 411-413. https://academic.oup.com/bioinformatics/article/26/3/411/215002

### Examples

    # loading a simulated counts data
    data('simNorm')

    # running PCIT analysis
    results <- PCIT(simNorm)

    # getting the clustering coefficient
    clustCoef(results$adj_sig)

[Package CeTF version 1.6.0 Index]