simulateT1 {CellNOptR} | R Documentation

## deprecated since version 1.3.28. Cut and simulation of a boolean model at t1. Use simulateTN instead.

### Description

This function cuts a model according to a bitstring optimised at T1, and simulates the model accordingly.

### Usage

    simulateT1(CNOlist, model, bStringT1, simList, indexList)

### Arguments

`CNOlist` | a CNOlist object
`model` | a full model
`bStringT1` | a bitstring to cut the model, as output by `gaBinaryT1` (i.e. a vector of 1s and 0s, of length equal to the number of reactions in the model)
`simList` | a list of additional fields for simulation as created by `prep4sim`, corresponding to the full model
`indexList` | a list of indexes as created by indexFinder

### Details

This function is a wrapper for simulatorT1, that cuts the model before simulating it

### Value

a matrix of simulated values, including all species in the model, i.e. to be used as input of gaBinaryT2 (not implemented here) but not to be used directly in `plotOptimResults.`

### Author(s)

C.Terfve

### See Also

cutAndPlotOptimResultsT1, simulatorT1

### Examples

    # This will compute the output of a random model obtained by randomly selecting
    # which gates of the initial models are included.

    data(CNOlistToy,package="CellNOptR")
    data(ToyModel,package="CellNOptR")

    indicesToy<-indexFinder(CNOlistToy,ToyModel,verbose=FALSE)
    ToyFields4Sim<-prep4sim(ToyModel)

    simRes<-simulateT1(
    	CNOlist=CNOlistToy,
    	model=ToyModel,
    	bStringT1=round(runif(length(ToyModel$reacID))),
    	simList=ToyFields4Sim,
    	indexList=indicesToy)

[Package CellNOptR version 1.40.0 Index]