.findStates_def {CellTrails} | R Documentation

## DEF: Find states

### Description

For details see `findStates`

### Usage

    .findStates_def(
      X,
      ordi,
      link.method = "ward.D2",
      min.size,
      max.pval = 1e-04,
      min.fc = 2,
      min.g = 5,
      reverse = FALSE,
      verbose = FALSE
    )

### Arguments

`X` | Expression matrix
`ordi` | Ordination of samples
`link.method` | Linkage criteria
`min.size` | Min size of inital clusters
`max.pval` | Pval threshold
`min.fc` | Fold-change threshold
`reverse` | Reverse order
`verbose` | For debug
`ming.g` | Feature cound threshold

### Author(s)

Daniel C. Ellwanger

[Package CellTrails version 1.12.0 Index]