contigs_qc {CellaRepertorium} | R Documentation

## Filtered and annotated contigs of TCR from mice

### Description

Data for c57bl6 and balbc mice TCR were downloaded from 10x Genomics website as shown in `system.file('script/10XMouseTCR_v3_chem.R', package = 'CellaRepertorium')`. Additional processing of these data is done in the vignette `mouse_tcell_qc` and are serialized to serve as an examples for other vignettes and documentation.

### Usage

    data(contigs_qc)

### Format

A data frame of 3399 contigs and 22 fields, all except 4 are originally defined in https://support.10xgenomics.com/single-cell-vdj/software/pipelines/latest/output/annotation#contig The following fields were defined ex post facto.

1. `anno_file`: Path to original csv file

2. `pop`: Mouse strain.

3. `sample`: An artificial "replicate" from the original data defined by subsampling with replacement

4. `celltype`: The putative cell type of the contig.

[Package CellaRepertorium version 1.4.0 Index]