GetGSEAMatrix {CelliD} | R Documentation

## Get Matrix from Enrichment Results

### Description

Extract enrcihment score Matrix from RunGSEA functions.

### Usage

    GetGSEAMatrix(X, metric = "ES")

### Arguments

`X` | an enrichment results obtained by RunGroupGSEA or RunCellGSEA
`metric` | a character indicating which metric to use as value of matrix (ES, NES, padj, pval)

### Value

A matrix of geneset enrichment metric with cell/group at columns and pathways/genesets at rows

### Examples

    seuratPbmc <- RunMCA(seuratPbmc, nmcs = 5)
    GSEAResults <- RunGroupGSEA(seuratPbmc, Hallmark, group.by = "seurat_clusters", dims = 1:5)
    GSEAMatrix <- GetGSEAMatrix(GSEAResults)

[Package CelliD version 1.2.1 Index]