enrichAnnoOverlap {ChIPseeker} | R Documentation

## enrichAnnoOverlap

### Description

calcuate overlap significant of ChIP experiments based on their nearest gene annotation

### Usage

    enrichAnnoOverlap(
      queryPeak,
      targetPeak,
      TxDb = NULL,
      pAdjustMethod = "BH",
      chainFile = NULL,
      distanceToTSS_cutoff = NULL
    )

### Arguments

`queryPeak` | query bed file
`targetPeak` | target bed file(s) or folder containing bed files
`TxDb` | TxDb
`pAdjustMethod` | pvalue adjustment method
`chainFile` | chain file for liftOver
`distanceToTSS_cutoff` | restrict nearest gene annotation by distance cutoff

### Value

data.frame

### Author(s)

G Yu

[Package ChIPseeker version 1.30.3 Index]