getTagMatrix.binning.internal {ChIPseeker} | R Documentation

## getTagMatrix.binning.internal

### Description

calculate the tagMatrix by binning the idea was derived from the function of deeptools https://deeptools.readthedocs.io/en/develop/content/tools/computeMatrix.html

### Usage

    getTagMatrix.binning.internal(
      peak,
      weightCol = NULL,
      windows,
      nbin = 800,
      upstream = NULL,
      downstream = NULL,
      ignore_strand = FALSE
    )

### Arguments

`peak` | peak peak file or GRanges object
`weightCol` | weightCol column name of weight, default is NULL
`windows` | windows a collection of region with equal or not equal size, eg. promoter region, gene region.
`nbin` | the amount of nbines needed to be splited and it should not be more than min_body_length
`upstream` | rel object, NULL or actual number
`downstream` | rel object, NULL or actual number
`ignore_strand` | ignore the strand information or not

### Value

tagMatrix

[Package ChIPseeker version 1.30.3 Index]