plotAvgProf.binning {ChIPseeker} | R Documentation

## plotAvgProf.binning

### Description

plot the profile of peaks by binning

### Usage

    plotAvgProf.binning(
      tagMatrix,
      xlab = "Genomic Region (5'->3')",
      ylab = "Peak Count Frequency",
      conf,
      facet = "none",
      free_y = TRUE,
      upstream = NULL,
      downstream = NULL,
      label,
      ...
    )

### Arguments

`tagMatrix` | tagMatrix or a list of tagMatrix
`xlab` | x label
`ylab` | y label
`conf` | confidence interval
`facet` | one of 'none', 'row' and 'column'
`free_y` | if TRUE, y will be scaled
`upstream` | rel object reflects the percentage of flank extension, e.g rel(0.2) integer reflects the actual length of flank extension or TSS region NULL reflects the gene body with no extension
`downstream` | rel object reflects the percentage of flank extension, e.g rel(0.2) integer reflects the actual length of flank extension or TSS region NULL reflects the gene body with no extension
`label` | label
`...` | additional parameter

### Value

ggplot object

[Package ChIPseeker version 1.30.3 Index]