crossSampleDoublets {CiteFuse} | R Documentation

## crossSampleDoublets

### Description

A function that perform normalisation for alternative expression

### Usage

    crossSampleDoublets(sce, altExp_name = NULL, totalExp_threshold = 10)

### Arguments

`sce` | A `SingleCellExperiment` object
`altExp_name` | Name of alternative expression that will be used to perform normalisation. If it is NULL, it will set to HTO.
`totalExp_threshold` | the threshold indicates for the HTO less than this threshold will be filtered from the analysis

### Value

A SingleCellExperiment Object

### Examples

    data(CITEseq_example, package = "CiteFuse")
    sce_citeseq <- preprocessing(CITEseq_example)
    sce_citeseq <- normaliseExprs(sce = sce_citeseq,
    altExp_name = "HTO",
    transform = "log")
    sce_citeseq <- crossSampleDoublets(sce_citeseq)

[Package CiteFuse version 1.6.0 Index]