proteinPlot {ComPrAn} | R Documentation

## Create Line Plots

### Description

This function creates a line plot for a proteins in dataFrame specified by protein

### Usage

    proteinPlot(
      dataFrame,
      protein,
      max_frac,
      grid = TRUE,
      titleLabel = "all",
      titleAlign = "left",
      ylabel = "Relative Protein Abundance",
      xlabel = "Fraction",
      legendLabel = "Condition",
      labelled = "Labeled",
      unlabelled = "Unlabeled",
      controlSample = "",
      textSize = 12,
      axisTextSize = 8
    )

### Arguments

`dataFrame` | data frame, contains columns: 'Protein Group Accessions' character; 'Protein Descriptions' character;bFraction integer; isLabel character ("TRUE"/"FALSE" values);'Precursor Area' double; scenario character
`protein` | character the protein of interest
`max_frac` | integer total number of fractions
`grid` | logical specifies presence/absence of gridline in the plot
`titleLabel` | character, if it is 'all' or 'GN', it specifies whether to show full label or just the gene name, if any other character is used, the value of titleLabel will be used as plot title
`titleAlign` | character one of the 'left', 'center'/'centre', 'right', specifies alignment of the title in plot
`ylabel` | character
`xlabel` | character
`legendLabel` | character
`labelled` | character label to be used for isLabel == TRUE
`unlabelled` | character label to be used for isLabel == FALSE
`controlSample` | character, either labelled or unlabelled, this setting will adjust plot coloring based on which sample is a control
`textSize` | numeric, size of text in the plot
`axisTextSize` | numeric, size of axis labels in the plot

### Value

a plot

### Examples

    ##Use example normalised proteins file
    inputFile <- system.file("extData", "dataNormProts.txt", package = "ComPrAn")
    #read file in and change structure of table to required format
    forAnalysis <- protImportForAnalysis(inputFile)
    ##example plot:
    protein <- "P52815"
    max_frac <- 23
    proteinPlot(forAnalysis, protein, max_frac)

[Package ComPrAn version 1.2.0 Index]