ComplexHeatmap-package {ComplexHeatmap} | R Documentation

## Make complex heatmaps

### Description

Make complex heatmaps

### Details

This package aims to provide a simple and flexible way to arrange multiple heatmaps as well as flexible annotation graphics.

The package is implemented in an object-oriented way. The heatmap lists are abstracted into several classes.

- `Heatmap-class`: a single heatmap containing heatmap body, row/column names, titles, dendrograms and annotations.

- `HeatmapList-class`: a list of heatmaps and annotations.

- `HeatmapAnnotation-class`: a list of row/column annotations.

There are also several internal classes:

- `SingleAnnotation-class`: a single row annotation or column annotation.

- `ColorMapping-class`: mapping from values to colors.

- `AnnotationFunction-class`: construct an annotation function which allows subsetting.

Following two high-level functions take use of functionality of complex heatmaps:

- `oncoPrint`: oncoPrint plot which visualize genomic alterations in a set of genes.

- `densityHeatmap`: use heatmaps to visualize density distributions.

The complete reference of ComplexHeatmap package is available at http://jokergoo.github.io/ComplexHeatmap-reference/book.

### Examples

    # There is no example
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[Package ComplexHeatmap version 2.10.0 Index]