0f19e1f03b73fa78464a74a427c71a2a *DESCRIPTION
04abe9acd244279b6c0e43be816f967f *INDEX
a796bb7d75e79fe05c8beeb2713e90a4 *Meta/Rd.rds
8503e676975364d771072956cdbca633 *Meta/features.rds
7bcfe7602d6aaf77d249a1bce391d641 *Meta/hsearch.rds
b4e7ceb3daa35a761d1bc61e7b710732 *Meta/links.rds
b2ac51441a4e8bf6e8913347ea7245cb *Meta/nsInfo.rds
3975105591fbf63d2b89378fe6469c43 *Meta/package.rds
947b96343e4a4b6421bc05a509c96847 *Meta/vignette.rds
729c50955a736ca2094cfdcab65e564b *NAMESPACE
d41d8cd98f00b204e9800998ecf8427e *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/CopyNumberPlots
f96bd5938fb128b8a19be9fcf77a3418 *R/CopyNumberPlots.rdb
65cafd483bd684914d6306b786ff1e59 *R/CopyNumberPlots.rdx
1f1c19880a554aab393154f04c3c45c2 *doc/CopyNumberPlots.R
587e2d62d3808e97d1b43d79cbe7caf2 *doc/CopyNumberPlots.Rmd
61c9b325f423bb75a57c0db76741d7a2 *doc/CopyNumberPlots.html
5d90ee5b5a5633fd64c613baaa540300 *doc/index.html
008d3351fb8c41e512fba63b74543b6d *extdata/CNVkit_output.cns
4136f91f446256a68f86b278edab7c6f *extdata/DECoN_output.txt
66c11b914cca097fab4022bc607133b5 *extdata/DNACopy_output.seg
9fc4fa5f4efc34e93e1a0a11c79099f8 *extdata/S1.rawdata.txt
fc90709b17e1210e4373edf2f0d4158d *extdata/S1.segments.txt
7147d6dc743cd42b66256bf8b1e4fce8 *extdata/S2.rawdata.txt
c712bb81fbac1d6b02135695a720369c *extdata/S2.segments.txt
5ffd79cbbcd65077001bff19b41992c8 *extdata/S3.rawdata.txt
d1a7ee3e9bc991c27b9fdc3fb56bde2a *extdata/S3.segments.txt
91efe67aa6d6d76729238e8c81ba5470 *extdata/SNP_example_data.csv
01f353d3efcb69fff9ab065d0ac38079 *extdata/cn.mops.segmentation.csv
5161203ed876bce6f1bc20c86a8cba6a *extdata/example.vcf.gz
644d3c7029cd7f5b79da1b9564a8e34d *extdata/example.vcf.gz.tbi
df5dc01ccd1592979225e3e2474c21ad *extdata/pennCNV.rawcnv
888d6b9933b6b99134e25ea40b80ac17 *extdata/snp.data_test.csv
8fbda5278bcab786685c0464c0f461e2 *extdata/snp.data_test2.csv
ee13d90cbb5c476ef154dc5b5faaa70c *help/AnIndex
300e223512d7055e6d9f7828bb91ca85 *help/CopyNumberPlots.rdb
55c00f789026d4f23d9659145b417841 *help/CopyNumberPlots.rdx
1c15ebb92f333ec833446615fd9376e7 *help/EnsemblStyle.html
57804547bf7aa7f502856806685e9e03 *help/UCSCStyle.html
64ec7cb839f61b360c31156c12807e9a *help/Ztree2Hclust.html
bf17c3a726233be43f44ee334fdf3b24 *help/aliases.rds
8901cddc2efb0fe73e650a28f85a5d0b *help/colByCopyNumber.html
afb8ecc85c33286ad9ce64b4f9c0eee0 *help/computeHclustPlotOrder.html
c2aacb7d7be434da1fec4f924c26d0a4 *help/getBAFColumn.html
0e7738115befb323519e6a62f91662b1 *help/getChrColumn.html
63e0a8b1941094b7334a9b5ec49cbb30 *help/getColumn.html
ca96f200ba53a3b6e0e3e75bdf6ba023 *help/getCopyNumberColors.html
8d96413823e8ee75ecc57de317a1d678 *help/getCopyNumberColumn.html
ece0e1e68d7cd7558dcdd90b4df7e71a *help/getEndColumn.html
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9826442ced703df9f68ecbfc636e14e3 *help/getLOHColumn.html
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6dad2b4adad73f5e7de964eb945682e9 *help/getPosColumn.html
46d7a80144d05195ad164d0d98233778 *help/getSegmentValueColumn.html
38dfdd02aa631c5ef6be61ecfdce78c5 *help/getStartColumn.html
b0a4c8ae513596d8a1a8d171039aded7 *help/loadCopyNumberCalls.html
ff02f0d2301e1c93673a3fc6f6cee8b8 *help/loadCopyNumberCallsCNVkit.html
deff006ca09652affbffa985ef3d1356 *help/loadCopyNumberCallsCnmops.html
fb0d27d25bc5685cd97d7c1632b6dd1e *help/loadCopyNumberCallsDECoN.html
bec7d0727cf5f1d5d73eb7ec08d647a1 *help/loadCopyNumberCallsDNAcopy.html
b79ef8b0f0f7764b9a4bc94518f6d8e6 *help/loadCopyNumberCallsPanelcnmops.html
0fb9472f6af62fddaa578f988d9f7df5 *help/loadCopyNumberCallsSeg.html
a465e15a55d89be5a77f8a70411e1b03 *help/loadCopyNumberCallspennCNV.html
0e7db2994897f690f53ce3de6e6cce58 *help/loadSNPData.html
627b7a191fb06897f55aac15efb0090a *help/loadSNPDataDNAcopy.html
d20e03b5e6884d885fabcc7f2bd17bd7 *help/loadSNPDataFromVCF.html
b95097a1408c2b67c6ed6240e65d5304 *help/paths.rds
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b62ab8a1510f491a6a4fc39b08352033 *help/plotLRR.html
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7cfcf0695e62bfe40bea994f5c5c2d08 *help/removeNAs.html
ed51d251e67fcdc7bf48a17e86ef6a2a *help/transformChr.html
cbf6185823c29d1f0a4e28ec2f3fa43b *html/00Index.html
d62496cdecbfed83e52fdacfc23f5613 *html/EnsemblStyle.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
4a8888f4ccff9da5412c15e906e6606d *html/UCSCStyle.html
95d44614f5f6ba8cd7d14aec2f87e031 *html/Ztree2Hclust.html
6ab71e95d76005f7c9ed404fba92947f *html/colByCopyNumber.html
7846fe14910e0394ddd229ffcd4e4d4f *html/computeHclustPlotOrder.html
ca6efc33f73d8c9a98bc3742ea6deb0f *html/getBAFColumn.html
df8d308c09a8c40eb8f7ef41c4ade57e *html/getChrColumn.html
d1738791e874efac0fea4942b0d09d89 *html/getColumn.html
9a15384dc1667142c121565d499207ac *html/getCopyNumberColors.html
332a804c102a39c76697bf030e4596e9 *html/getCopyNumberColumn.html
e4e6dbe869a2e470fcfaef0ee95f606b *html/getEndColumn.html
5c5150abb48a25be3a9f150206495fa2 *html/getIDColumn.html
d0f614b38d7de5f151422c3c5e5f90c3 *html/getLOHColumn.html
7f9cf335908f52e988761c252f3f4a7d *html/getLRRColumn.html
5388f0bc01b1e36fed61842695b082b9 *html/getPosColumn.html
5723987537d9ba6dad8deb180344785b *html/getSegmentValueColumn.html
711261c61b7421e6e38c9ae1b34adf76 *html/getStartColumn.html
a4c128b74dcf242fceb736eb737aa9d2 *html/loadCopyNumberCalls.html
019159d116143f57c9df553e64df2c5a *html/loadCopyNumberCallsCNVkit.html
1e3d8613a3173a0f54dc70d10acea42a *html/loadCopyNumberCallsCnmops.html
121ff97491bacaa244245517576d448d *html/loadCopyNumberCallsDECoN.html
54721887027a1eafe30988031e278070 *html/loadCopyNumberCallsDNAcopy.html
3ca3ae0d4c9762961177c7d851379bac *html/loadCopyNumberCallsPanelcnmops.html
39a20d7183f1256c62dfade35d3ed6b7 *html/loadCopyNumberCallsSeg.html
9399d13955d5e9afb5d4cc4dfc282382 *html/loadCopyNumberCallspennCNV.html
d850f6e5bea91aea22ed672c4ddd7f46 *html/loadSNPData.html
7ef00e2ba9316d81c637a92fae3d64d4 *html/loadSNPDataDNAcopy.html
f148e47dfded2ebf9ad383f98fe7af93 *html/loadSNPDataFromVCF.html
f3a7bc4ba9a3acb0057c1d41ffec8bf3 *html/plotBAF.html
9bd650ce512a312b48397cb4a699b960 *html/plotCopyNumberCalls.html
0351cdd6c407e08a098f91f57ce560df *html/plotCopyNumberCallsAsLines.html
8a873018d775d614e00fed0275813698 *html/plotCopyNumberSummary.html
786e13985d7abcccebb9a15407dff052 *html/plotLRR.html
fc61cedeb1cae1c5d5e46af55b6c16ea *html/plotSingleCellCopyNumberCalls.html
81ab1cb748e83ef0944eadce0097beae *html/plotSingleCellCopyNumberSummary.html
cbfc7c86d30638bd788313134d10b635 *html/prepareLabels.html
a672675cb4b29d2ac4d74b0616b92092 *html/readHDF5Ztree.html
116b63bcd9027035b10cd88cf21252cd *html/removeNAs.html
8839155939f5afa0c72851b202079dd4 *html/transformChr.html
