plotPieCluster {CytoTree} | R Documentation

## Visualization pie plot of cluster data of CYT

### Description

Visualization pie plot of cluster data of CYT

### Usage

    plotPieCluster(
      object,
      item.use = c("PC_1", "PC_2"),
      cex.size = 1,
      size.by.cell.number = TRUE,
      main = "2D pie plot of CYT",
      plot.theme = theme_bw()
    )

### Arguments

`object` | An CYT object
`item.use` | character. Items use to 2D plot, axes x and y must be numeric.
`cex.size` | numeric. Size of the dot
`size.by.cell.number` | logical. Whether to show size of cell number.
`main` | character. Title of the plot.
`plot.theme` | themes from `ggplot2`

### Value

ggplot2 figure

### Examples

    cyt.file <- system.file("extdata/cyt.rds", package = "CytoTree")
    cyt <- readRDS(file = cyt.file)

    # Runs only have more than two stages
    plotPieCluster(cyt, cex.size = 0.5)

    plotPieCluster(cyt, item.use = c("PC_1", "PC_2"), cex.size = 0.5)
    plotPieCluster(cyt, item.use = c("PC_2", "PC_3"), cex.size = 0.5)

    plotPieCluster(cyt, item.use = c("tSNE_1", "tSNE_2"), cex.size = 20)

    plotPieCluster(cyt, item.use = c("DC_1", "DC_2"), cex.size = 0.5)

    plotPieCluster(cyt, item.use = c("UMAP_1", "UMAP_2"), cex.size = 1)
    plotPieCluster(cyt, item.use = c("UMAP_1", "UMAP_2"), cex.size = 1)

[Package CytoTree version 1.4.0 Index]