plotPieTree {CytoTree} | R Documentation

## plot MST pie of CYT

### Description

plot MST pie of CYT

### Usage

    plotPieTree(
      object,
      cex.size = 2,
      size.by.cell.number = TRUE,
      as.tree = FALSE,
      root.id = NULL,
      show.node.name = FALSE
    )

### Arguments

`object` | an CYT object
`cex.size` | numeric. size cex of the dot
`size.by.cell.number` | logical. Whether to size node by cell number
`as.tree` | logical. Whether to show node as tree
`root.id` | numeric. Root id of the tree, if as.tree is TRUE
`show.node.name` | logical. whether to show node name

### Value

ggplot2 figure

### Examples

    cyt.file <- system.file("extdata/cyt.rds", package = "CytoTree")
    cyt <- readRDS(file = cyt.file)

    # Runs only have two or more stages
    plotPieTree(cyt, cex.size = 1, size.by.cell.number = TRUE)

[Package CytoTree version 1.4.0 Index]