plotViolin {CytoTree} | R Documentation

## Visualization violin plot of CYT

### Description

Visualization violin plot of CYT

### Usage

    plotViolin(
      object,
      marker,
      color.by = "cluster.id",
      order.by = NULL,
      size = 1,
      text.angle = 0,
      main = "Violin plot CYT",
      plot.theme = theme_bw()
    )

### Arguments

`object` | An CYT object
`marker` | character. Markers used to plot
`color.by` | character. Dot or mesh color by which character. It can be one of the column of plot.meta, or it can be just "density" (the default value).
`order.by` | vector. Order of color theme.
`size` | numeric. Size of the dot
`text.angle` | numberic. Text angle of the violin plot
`main` | character. Title of the plot.
`plot.theme` | themes from `ggplot2`

### Value

ggplot2 figure

### Examples

    cyt.file <- system.file("extdata/cyt.rds", package = "CytoTree")
    cyt <- readRDS(file = cyt.file)

    plotViolin(cyt, marker = "CD34")
    plotViolin(cyt, marker = "CD34", order.by = "pseudotime")

[Package CytoTree version 1.4.0 Index]