degSignature {DEGreport} | R Documentation

## Plot gene signature for each group and signature

### Description

Given a list of genes beloging to a different classes, like markers, plot for each group, the expression values for all the samples.

### Usage

    degSignature(
      counts,
      signature,
      group = NULL,
      metadata = NULL,
      slot = 1,
      scale = FALSE
    )

### Arguments

`counts` | expression data. It accepts bcbioRNASeq, DESeqDataSet and SummarizedExperiment. As well, data.frame or matrix is supported, but it requires metadata in that case.
`signature` | data.frame with two columns: a) genes that match row.names of counts, b) label to classify the gene inside a group. Normally, cell tissue name.
`group` | character in metadata used to split data into different groups.
`metadata` | data frame with sample information. Rownames should match `ma` column names row number should be the same length than p-values vector.
`slot` | slotName in the case of SummarizedExperiment objects.
`scale` | Whether to scale or not the expression.

### Value

ggplot plot.

### Examples

    data(humanGender)
    data(geneInfo)
    degSignature(humanGender, geneInfo, group = "group")

[Package DEGreport version 1.30.3 Index]