res_DegNorm_chr21 {DegNorm} | R Documentation

## Example DegNormClass data

### Description

Example of `DegNormClass` data from DegNorm package. It is the output from `degnorm` function for human chromosome 21.

### Usage

    data("res_DegNorm_chr21")

### Format

A `DegNormClass` list of the following items:

`counts`

  a data.drame of read counts for each gene within each sample.

`counts_normed`

  a data.drame of degradation-normalized read counts for each gene within each sample.

`DI`

  a matrix of degradation index scores for each gene within each sample.

`K`

  normalizing scale factor for each gene within each sample after accounting for degradation normalization.

`convergence`

  convergence tag; 0 = degnorm was not done on this gene because smaller counts or too short length.1 = degnorm was done with baseline selection. 2 = degnorm done without baseline selection because gene length (after filtering out low count regions)<200 bp. 3= baseline was found, but DI score is too large. 4 = baseline selection didn't coverge.

`envelop`

  a list of the envelop curves for all genes.

### Examples

    data(res_DegNorm_chr21)
    summary_DegNormClass(res_DegNorm_chr21)

[Package DegNorm version 1.4.0 Index]