methDataSet-class {ENmix} | R Documentation

## Class `"methDataSet"`

### Description

A class for storing Illumina methylation array methylated and unmethylated intensity data, and CpG annotation infomation.

### Usage

    methDataSet(Meth = new("matrix"), Unmeth = new("matrix"),
        rowData=new("DataFrame"),...)

### Arguments

`Meth` | A matrix of methylated intensity values with row for CpGs and column for samples
`Unmeth` | A matrix of unmethylated intensity values with row for CpGs and column for samples
`rowData` | A dataframe contains CpG annotation information
`...` | Other arguments for class SummarizedExperiment

### Details

CpG annotation information is incorporated in the object, and can be extracted using command `rowData`

### Value

An object of class `methDataSet`

### Examples

    showClass("methDataSet")

[Package ENmix version 1.30.03 Index]