TSCAN_Clust {FEAST} | R Documentation

## TSCAN Clustering

### Description

TSCAN Clustering

### Usage

    TSCAN_Clust(Y, k, minexpr_percent = 0.5, cvcutoff = 1, input_markers = NULL)

### Arguments

`Y` | A expression matrix. It is recommended to use the raw count matrix.
`k` | The number of clusters. If it is not provided, k is estimated by the default method in SC3.
`minexpr_percent` | minimum expression threshold (default = 0.5).
`cvcutoff` | the cv cutoff to filter the genes (default = 1).
`input_markers` | A character vector including the featured genes. If they are not presented, SC3 will take care of this.

### Value

the clustering labels and the featured genes.

### Examples

     data(Yan)
     k = length(unique(trueclass))
     # TSCAN_res = TSCAN_Clust(Y, k=k)

[Package FEAST version 1.2.0 Index]