parse_json_config {FLAMES} | R Documentation

## Parse Json Configuration File

### Description

Convert a json configuration file into a named R list, grouped into sub lists according to their usage in the Flames pipeline.

### Usage

    parse_json_config(json_file)

### Arguments

`json_file` | the file path to the JSON file to convert into an R list. This can be the default FLAMES configuration file found using `get_default_config_file()`

### Value

A named R list of the parameters in `json_file`. Subsections are: `pipeline_parameters`, `global_parameters`, `isoform_parameters`, `alignment_parameters`, `realign_parameters` and `transcript_counting`.

### Examples

    config <- get_default_config_file()
    ## Not run:
    parse_json_config(config)

    ## End(Not run)

[Package FLAMES version 1.0.2 Index]