calculatePSIValues {FRASER} | R Documentation

## PSI value calculation

### Description

This function calculates the PSI values for each junction and splice site based on the FraserDataSet object

### Usage

    calculatePSIValues(
      fds,
      types = psiTypes,
      overwriteCts = FALSE,
      BPPARAM = bpparam()
    )

### Arguments

`fds` | A `FraserDataSet` object
`types` | A vector with the psi types which should be calculated. Default is all of psi5, psi3 and theta.
`overwriteCts` | FALSE or TRUE (the default) the total counts (aka N) will be recalculated based on the existing junction counts (aka K)
`BPPARAM` | the BiocParallel parameters for the parallelization

### Value

FraserDataSet

### Examples

      fds <- createTestFraserDataSet()
      fds <- calculatePSIValues(fds, types="psi5")

      ### usually one would run this function for all psi types by using:
      # fds <- calculatePSIValues(fds)

[Package FRASER version 1.6.1 Index]