findIT_TTPair {FindIT2} | R Documentation

## findI(nfluential)T(F)_T(F)T(arget)Pair

### Description

find influential TF of your input gene set based on public TF-Target data

### Usage

    findIT_TTPair(
      input_genes,
      TF_target_database,
      gene_background = NULL,
      TFHit_min = 5,
      TFHit_max = 10000
    )

### Arguments

`input_genes` | a character vector which represent genes set which you want to find influential TF for
`TF_target_database` | TF_target pair data with two column named TF_id and target_gene
`gene_background` | a character vector represent your bakcaground gene. If you do not assign background gene, program will consider all target gene as background
`TFHit_min` | minimal size of target gene regulated by TF
`TFHit_max` | maximal size of target gene regulated by TF

### Value

data.frame

### Examples

    data("TF_target_database")
    data("test_geneSet")

    result_findIT_TTPair <- findIT_TTPair(
        input_genes = test_geneSet,
        TF_target_database = TF_target_database
    )

[Package FindIT2 version 1.0.3 Index]