TF_target_database {FindIT2} | R Documentation

## TF-target database

### Description

TF-target database

### Usage

    data(TF_target_database)

### Format

a data frame

### Source

http://bioinformatics.psb.ugent.be/webtools/iGRN/pages/download

### Examples

    ## Not run:
    # source
    library(dplyr)
    data <- read.table("~/reference/annoation/Athaliana/TF_target/iGRN_network_full.txt",
                      sep = "\t",
                      stringsAsFactors = FALSE)

    data %>%
    rename(TF_id = V1, target_gene = V2) %>%
    select(TF_id, target_gene) %>%
    TF_target_database <- filter(TF_id %in% c("AT1G28300",
    "AT5G63790", "AT5G24110", "AT3G23250")) %>%
    as.data.frame()

    save(TF_target_database, file = "inst/extdata/TF_target_database.rda", version = 2,
         compress = "bzip2")

    ## End(Not run)

[Package FindIT2 version 1.0.3 Index]