MetaclusterCVs {FlowSOM} | R Documentation

## MetaclusterCVs

### Description

Compute the coefficient of variation for the metaclusters

### Usage

    MetaclusterCVs(fsom)

### Arguments

`fsom` | Result of calling the FlowSOM function

### Value

Metacluster CVs

### Examples

    fileName <- system.file("extdata", "68983.fcs", package="FlowSOM")
    ff <- flowCore::read.FCS(fileName)
    ff <- flowCore::compensate(ff,ff@description$SPILL)
    ff <- flowCore::transform(ff,
             flowCore::transformList(colnames(ff@description$SPILL),
                                    flowCore::logicleTransform()))
    flowSOM.res <- FlowSOM(ff,scale=TRUE,colsToUse=c(9,12,14:18), nClus=10)
    cvs <- GetMetaclusterCVs(flowSOM.res)

[Package FlowSOM version 2.2.0 Index]