GetClusterMFIs {FlowSOM} | R Documentation

## Get MFI values for all clusters

### Description

Get MFI values for all clusters

### Usage

    GetClusterMFIs(fsom, colsUsed = FALSE, prettyColnames = FALSE)

### Arguments

`fsom` | FlowSOM object as generated by the FlowSOM function or the BuildSOM function
`colsUsed` | logical. Should report only the columns used to build the SOM. Default = FALSE.
`prettyColnames` | logical. Should report pretty column names instead of standard column names. Default = FALSE.

### Value

Matrix with median values for each marker

### Examples

    fileName <- system.file("extdata", "68983.fcs", package = "FlowSOM")
    flowSOM.res <- FlowSOM(fileName, compensate = TRUE, transform = TRUE,
                          scale = TRUE, colsToUse = c(9, 12, 14:18), nClus = 10)
    mfis <- GetClusterMFIs(flowSOM.res)

[Package FlowSOM version 2.2.0 Index]