GetMetaclusterCVs {FlowSOM} | R Documentation

## GetMetaclusterCVs

### Description

Compute the coefficient of variation for the metaclusters

### Usage

    GetMetaclusterCVs(fsom)

### Arguments

`fsom` | Result of calling the FlowSOM function

### Value

Metacluster CVs

### Examples

    fileName <- system.file("extdata", "68983.fcs", package = "FlowSOM")
    ff <- flowCore::read.FCS(fileName)
    ff <- flowCore::compensate(ff, flowCore::keyword(ff)[["SPILL"]])
    ff <- flowCore::transform(ff,
             flowCore::transformList(colnames(flowCore::keyword(ff)[["SPILL"]]),
                                    flowCore::logicleTransform()))
    flowSOM.res <- FlowSOM(ff,
                           scale = TRUE,
                           colsToUse = c(9, 12, 14:18),
                           nClus = 10)
    cvs <- GetMetaclusterCVs(flowSOM.res)

[Package FlowSOM version 2.2.0 Index]