metaClustering_consensus {FlowSOM} | R Documentation

## MetaClustering

### Description

Cluster data using hierarchical consensus clustering with k clusters

### Usage

    metaClustering_consensus(data, k = 7, seed = NULL)

### Arguments

`data` | Matrix containing the data to cluster
`k` | Number of clusters
`seed` | Seed to pass to consensusClusterPlus

### Value

Numeric array indicating cluster for each datapoint

### See Also

`MetaClustering`

### Examples

       # Read from file, build self-organizing map and minimal spanning tree
       fileName <- system.file("extdata", "68983.fcs", package = "FlowSOM")
       flowSOM.res <- ReadInput(fileName, compensate = TRUE,transform = TRUE,
                                scale = TRUE)
       flowSOM.res <- BuildSOM(flowSOM.res,colsToUse = c(9, 12, 14:18))
       flowSOM.res <- BuildMST(flowSOM.res)

       # Apply consensus metaclustering
       metacl <- metaClustering_consensus(flowSOM.res$map$codes, k = 10)

[Package FlowSOM version 2.2.0 Index]