ManualVector {FlowSOM} | R Documentation

## Summarise the gating matrix into one vector, only including the cell types of interest

### Description

Extract the compensated and transformed data and all gate labels.

### Usage

    ManualVector(manualMatrix, cellTypes)

### Arguments

`manualMatrix` | Matrix containing boolean values, indicating for every gate (column) whether the cell (row) is part of it or not.
`cellTypes` | Cell types to use in the summary vector. All others will be ignored and cells which do not fall in one of these gates will get the label "Unknown". Order is important!

### Value

A factor with one label for every cell

[Package FlowSOM version 2.2.0 Index]