BuildMST {FlowSOM} | R Documentation

## BuildMST

### Description

Build Minimal Spanning Tree

### Usage

    BuildMST(fsom, silent = FALSE, tSNE = FALSE)

### Arguments

`fsom` | FlowSOM object, as generated by `BuildSOM`
`silent` | If `TRUE`, no progress updates will be printed
`tSNE` | If `TRUE`, an alternative tSNE layout is computed as well

### Details

Add minimal spanning tree description to the FlowSOM object

### Value

FlowSOM object containing MST description

### See Also

`BuildSOM`, `PlotStars`

### Examples

    # Read from file, build self-organizing map
    fileName <- system.file("extdata", "68983.fcs", package="FlowSOM")
    flowSOM.res <- ReadInput(fileName, compensate=TRUE, transform = TRUE,
                             scale = TRUE)
    flowSOM.res <- BuildSOM(flowSOM.res, colsToUse = c(9, 12, 14:18))

    # Build the Minimal Spanning Tree
    flowSOM.res <- BuildMST(flowSOM.res)

[Package FlowSOM version 2.2.0 Index]