getAnnotation {FoldGO} | R Documentation

## Get annotation derived from annotation file

### Description

This method allows to retrieve annotation from `MgsaSets` or `GAFReader` class object in form of list contains GO term id's as keys and Gene ID's as values

### Usage

    getAnnotation(object)

    ## S4 method for signature 'AnnotationReader'
    getAnnotation(object)

    ## S4 method for signature 'list'
    getAnnotation(object)

    ## S4 method for signature 'MgsaSets'
    getAnnotation(object)

    ## S4 method for signature ''NULL''
    getAnnotation(object)

### Arguments

`object` | - Object of `mgsa` package `MgsaSets` class or `FoldGO` `GAFReader` class

### Value

list contains GO term id's as keys and Gene ID's as values

### Examples

    ## Not run:
    gaf_path <- system.file("extdata", "gene_association.tair.lzma",
                               package = "FoldGO", mustWork = TRUE)
    gaf <- GAFReader(file = gaf_path, geneid_col = 10)
    getAnnotation(gaf)

    ## End(Not run)

[Package FoldGO version 1.12.0 Index]