examdata_objs {FoldGO} | R Documentation

## Precompiled objects of GeneGroups, FuncAnnotGroups classes used in examples

### Description

up_groups

  object of GeneGroups class compiled from up-regulated genes from rna-seq experiment on auxin treatment of Arabidopsis thaliana roots

down_groups

  object of GeneGroups class compiled from down-regulated genes from rna-seq experiment on auxin treatment of Arabidopsis thaliana roots

up_annotobj

  object of FuncAnnotGroups class compiled from lists of up-regulated genes from rna-seq experiment on auxin treatment of Arabidopsis thaliana roots

up_annotobj

  object of FuncAnnotGroups class compiled from lists of down-regulated genes from rna-seq experiment on auxin treatment of Arabidopsis thaliana roots

### Usage

    up_groups

    down_groups

    up_annotobj

    down_annotobj

### Format

up_groups

  object of GeneGroups class

down_groups

  object of GeneGroups class

up_annotobj

  object of FuncAnnotGroupsTopGO class

up_annotobj

  object of FuncAnnotGroupsTopGO class

### Examples

    # load GeneGroups object with up-regulated genes from rna-seq experiment on auxin treatment
    # of Arabidopsis thaliana roots
    data("up_groups")
    # load FuncAnnotGroups object compiled from lists of up-regulated genes
    # from rna-seq experiment on auxin treatment of Arabidopsis thaliana roots
    data("up_annotobj")

[Package FoldGO version 1.12.0 Index]