GWASTools-defunct {GWASTools} | R Documentation

## Defunct Functions in Package ‘GWASTools’

### Description

These functions are defunct and no longer available.

### Details

The following functions are defunct; use the replacement indicated below:

- `pedigreeClean`: `pedigreeCheck`

- `pedigreeFindDuplicates`: `pedigreeCheck`

- `ncdfCreate`: `createDataFile`

- `ncdfAddData`: `createDataFile`

- `ncdfAddIntensity`: `createAffyIntensityFile`

- `ncdfCheckGenotype`: `checkGenotypeFile`

- `ncdfCheckIntensity`: `checkIntensityFile`

- `ncdfSetMissingGenotypes`: `setMissingGenotypes`

- `gdsSetMissingGenotypes`: `setMissingGenotypes`

- `ncdfImputedDosage`: `imputedDosageFile`

- `gdsImputedDosage`: `imputedDosageFile`

- `gdsCheckImputedDosage`: `checkImputedDosageFile`

- `assocTestRegression`: `assocRegression`

- `assocTestCPH`: `assocCoxPH`

- `assocTestFisherExact`: `batchFisherTest`

- `gwasExactHW`: `exactHWE`

- `ncdfSubset`: `gdsSubset`

- `ncdfSubsetCheck`: `gdsSubsetCheck`

- `plinkToNcdf`: `snpgdsBED2GDS`

- `convertVcfGds`: `snpgdsVCF2GDS`

[Package GWASTools version 1.40.0 Index]