75726d2127b0c42b2041df45da35d6b7 *CITATION
1414316df74c3511e4dbbb9cd650dd47 *DESCRIPTION
6bae65cfb6b16f8f6027a4d5e79fe1b5 *INDEX
7bae63a234e80ee7c6427dce9fdba6cc *LICENSE
96f2e4e08c6db67a2b2488b1bf9eacf5 *Meta/Rd.rds
536c8220685114177d470647e6ff8d47 *Meta/data.rds
8503e676975364d771072956cdbca633 *Meta/features.rds
c6962c6dc10ab8c8a93d2d77b76c56f0 *Meta/hsearch.rds
14c5ad6088784d46902f947281d602d2 *Meta/links.rds
1599841f033a2ca0c17c45933760f50f *Meta/nsInfo.rds
30a5de96170ab07e69626817073db08c *Meta/package.rds
133bae37d908166258b1f3d58c838b62 *Meta/vignette.rds
2ec5c9ac7ed56ae1d6567c1cbede2549 *NAMESPACE
76caa056cd106d7fd25dc4a1c6082de7 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/GenVisR
87dcfdc426d4362c2e66f47962fe35eb *R/GenVisR.rdb
581fccd2bc94d6d9e434ad4294d56f9f *R/GenVisR.rdx
62ee4d7fb46196a1775207a8a3a51641 *data/Rdata.rdb
ce7500455be46b3c71306fa16a6ba41c *data/Rdata.rds
5c1098056ca8d227a103e0de0b8fb7c5 *data/Rdata.rdx
490dc5689001e361ff6a504c5bc9e3ea *doc/Intro.R
d41b131cf7e5c6ce7f2022da3f8e6d12 *doc/Intro.Rmd
a70b8f648d08bb72102c76229920344e *doc/Intro.html
1e68ac26d886d542ef790fec1d7cc2b5 *doc/Upcoming_Features.R
dc9f7d5200f966eee8ad1a208c85d609 *doc/Upcoming_Features.Rmd
25f2dff84cfcfa8cdb22851af9d7f32a *doc/Upcoming_Features.html
36ab9a3991cb63c3e8620f685624f45e *doc/index.html
f6462cf0989d9369ab0bbb7f4fdd2a62 *doc/waterfall_introduction.R
18bd33b81c1cd12da0d02bf49c884403 *doc/waterfall_introduction.Rmd
392cc93a395922aeee85f179dd365de0 *doc/waterfall_introduction.html
b98bf807ae47283ac3f6b25dc81746f7 *extdata/FL.gms
1dd7effe62fb25121948958cc8a5947a *extdata/FLX001-Naive.gms_test
b50a905030d39ae1b5a79b0ff2fcda80 *extdata/FLX0010Naive.vep
4c4f997555f0d1e403daebbba9ac86c0 *extdata/FLX003-Naive.gms_test
df9f05c5311a788c6abd090bea7fae0b *extdata/FLX0030Naive.vep
f281dd3c087238c20f61ec0dd4a3c075 *extdata/FLX0040Naive.vep
0a44e19bbf35ac4f6658b88d036f21f4 *extdata/FLX0050Naive.vep
1d9179e5449cd3a3fbc419ad7e31851c *extdata/FLX0070Naive.vep
509d9f8b894b87bf413db9d35e3c1cc4 *extdata/brca.maf
f8ab4dafb0189d12bf682281aaa1f5d5 *help/AnIndex
60db1036abbc63335d660ab392afdf4e *help/Clinical-class.html
60db1036abbc63335d660ab392afdf4e *help/Clinical.html
848fd65dbcadca940fa0dea36a562cab *help/GMS-class.html
848fd65dbcadca940fa0dea36a562cab *help/GMS.html
ae773d7df17b63f0a263f8b4c1e14a08 *help/GMS_Virtual-class.html
54f8a47a65f70b6a9b3fe7c7ddea374e *help/GMS_v4-class.html
54f8a47a65f70b6a9b3fe7c7ddea374e *help/GMS_v4.html
512ba3675a43e7f8e979e527c396a4bd *help/GenVisR.html
d456a4a5aaf31ca93d60c7e245b2480f *help/GenVisR.rdb
119c69bc02413eee635861b86724ef7c *help/GenVisR.rdx
de66906f441d39e0fcdb5dac0fd9a1f0 *help/HCC1395_Germline.html
c79e94433b8848b11834cddcf2af57d8 *help/HCC1395_N.html
a372232c43a3e04e5f1cde027f984da0 *help/HCC1395_T.html
16a27667ec5aa7ae38ca60adaad3f62f *help/Lolliplot-class.html
85cea924e4d818ddee98292fe05baef6 *help/Lolliplot.html
51b0c533c23154852354ea51b5552cee *help/LucCNseg.html
f0c0bdd4cfc230d2f338d80cb30d1cc8 *help/MutSpectra-class.html
f0c0bdd4cfc230d2f338d80cb30d1cc8 *help/MutSpectra.html
853253fbc2e1e77eb3ebd86259d92806 *help/MutationAnnotationFormat-class.html
853253fbc2e1e77eb3ebd86259d92806 *help/MutationAnnotationFormat.html
a003b7f5f61b9d59452ae8a60c9e683a *help/MutationAnnotationFormat_Virtual-class.html
3c967d5a5ad7438430e6cfbb7c0ec2fc *help/MutationAnnotationFormat_v1.0-class.html
3c967d5a5ad7438430e6cfbb7c0ec2fc *help/MutationAnnotationFormat_v1.0.html
2d979b8f72ba4b59b1c23a5fca164956 *help/MutationAnnotationFormat_v2.0-class.html
2d979b8f72ba4b59b1c23a5fca164956 *help/MutationAnnotationFormat_v2.0.html
e0cbcdb54d6586e52b9255796699fbf5 *help/MutationAnnotationFormat_v2.1-class.html
e0cbcdb54d6586e52b9255796699fbf5 *help/MutationAnnotationFormat_v2.1.html
a05abde6961bc8457ff0832587568a6b *help/MutationAnnotationFormat_v2.2-class.html
a05abde6961bc8457ff0832587568a6b *help/MutationAnnotationFormat_v2.2.html
3516608d60aaedb03831cb12df9d990a *help/MutationAnnotationFormat_v2.3-class.html
3516608d60aaedb03831cb12df9d990a *help/MutationAnnotationFormat_v2.3.html
e2b585bdf903c093bafc5e370a67160c *help/MutationAnnotationFormat_v2.4-class.html
e2b585bdf903c093bafc5e370a67160c *help/MutationAnnotationFormat_v2.4.html
3af971311702218648951e5444467ff6 *help/PIK3CA.html
270e8a0b5a3a1116bdda27cf71da479c *help/Rainfall-class.html
270e8a0b5a3a1116bdda27cf71da479c *help/Rainfall.html
c645fa93e2dc0a17e31eed043990dc2c *help/SNPloci.html
2f73c0b5b4ac5806ad3a74afc5c291f3 *help/TvTi.html
f4e3c13e221637b7bb59d5cf2095404f *help/VEP-class.html
f4e3c13e221637b7bb59d5cf2095404f *help/VEP.html
7eb112b63ce589a0e36ec7850ad11193 *help/VEP_Virtual-class.html
36547d7267899c234bbdac1c012c10d6 *help/VEP_v88-class.html
36547d7267899c234bbdac1c012c10d6 *help/VEP_v88.html
fb06b07a4db98c4209b307b44ada05f6 *help/Waterfall-class.html
748f4ee69788e06088d124507cc231a1 *help/Waterfall.html
e30236df75e66f3b3ddf3486d0f79b34 *help/aliases.rds
564361e98ce9bb6952d65e93aafbf64d *help/brcaMAF.html
7a221d5578c3fb1d039acbb3e2b0d4ac *help/cnFreq.html
757189e7bb976f34e440732db2aafd45 *help/cnSpec.html
cc0dd4dd7ef93cbf81b87e2e6b15e9b9 *help/cnView.html
9905979233d23fdf33ff8e4cd9e2d1ec *help/compIdent.html
27f763e96074f8a86b0b98cc2a1347b1 *help/covBars.html
e0a8d51fe3b34d16d762e25202428438 *help/cytoGeno.html
dcf13ad66beb925d1c25c05749dbd49a *help/drawPlot+2CClinical-method.html
dcf13ad66beb925d1c25c05749dbd49a *help/drawPlot+2CLolliplot-method.html
dcf13ad66beb925d1c25c05749dbd49a *help/drawPlot+2CMutSpectra-method.html
dcf13ad66beb925d1c25c05749dbd49a *help/drawPlot+2CRainfall-method.html
dcf13ad66beb925d1c25c05749dbd49a *help/drawPlot+2CWaterfall-method.html
dcf13ad66beb925d1c25c05749dbd49a *help/drawPlot-methods.html
dcf13ad66beb925d1c25c05749dbd49a *help/drawPlot.html
2661ead73af9ab4415bc6084b04b04db *help/genCov.html
ae444fbd1dfe6d17ead0e1be6c3bce28 *help/geneViz.html
67264cad9ee74648fc54a378cc5c596e *help/getData+2CClinical-method.html
67264cad9ee74648fc54a378cc5c596e *help/getData+2CClinicalData-method.html
67264cad9ee74648fc54a378cc5c596e *help/getData+2CLolliplot-method.html
67264cad9ee74648fc54a378cc5c596e *help/getData+2CLolliplotData-method.html
67264cad9ee74648fc54a378cc5c596e *help/getData+2CMutSpectra-method.html
67264cad9ee74648fc54a378cc5c596e *help/getData+2CMutSpectraPrimaryData-method.html
67264cad9ee74648fc54a378cc5c596e *help/getData+2CRainfall-method.html
67264cad9ee74648fc54a378cc5c596e *help/getData+2CRainfallPrimaryData-method.html
67264cad9ee74648fc54a378cc5c596e *help/getData+2CWaterfall-method.html
67264cad9ee74648fc54a378cc5c596e *help/getData+2CWaterfallData-method.html
67264cad9ee74648fc54a378cc5c596e *help/getData-methods.html
67264cad9ee74648fc54a378cc5c596e *help/getData.html
a90e3067077aa9a6289d937a4af5309d *help/getDescription+2CVEP-method.html
a90e3067077aa9a6289d937a4af5309d *help/getDescription+2CVEP_Virtual-method.html
a90e3067077aa9a6289d937a4af5309d *help/getDescription-methods.html
a90e3067077aa9a6289d937a4af5309d *help/getDescription.html
377ab8889f54dda187125b2569eeb9d6 *help/getGrob+2CLolliplot-method.html
377ab8889f54dda187125b2569eeb9d6 *help/getGrob+2CLolliplotPlots-method.html
377ab8889f54dda187125b2569eeb9d6 *help/getGrob+2CMutSpectra-method.html
377ab8889f54dda187125b2569eeb9d6 *help/getGrob+2CMutSpectraPlots-method.html
377ab8889f54dda187125b2569eeb9d6 *help/getGrob+2CRainfall-method.html
377ab8889f54dda187125b2569eeb9d6 *help/getGrob+2CRainfallPlots-method.html
377ab8889f54dda187125b2569eeb9d6 *help/getGrob+2CWaterfall-method.html
377ab8889f54dda187125b2569eeb9d6 *help/getGrob+2CWaterfallPlots-method.html
377ab8889f54dda187125b2569eeb9d6 *help/getGrob-methods.html
377ab8889f54dda187125b2569eeb9d6 *help/getGrob.html
88d3e7aef9d59abf5f1c89dd84e85021 *help/getHeader+2CVEP-method.html
88d3e7aef9d59abf5f1c89dd84e85021 *help/getHeader+2CVEP_Virtual-method.html
88d3e7aef9d59abf5f1c89dd84e85021 *help/getHeader-methods.html
88d3e7aef9d59abf5f1c89dd84e85021 *help/getHeader.html
bd9a057f0680169339e7b8324d6605e7 *help/getMeta+2CGMS-method.html
bd9a057f0680169339e7b8324d6605e7 *help/getMeta+2CGMS_Virtual-method.html
bd9a057f0680169339e7b8324d6605e7 *help/getMeta+2CMutationAnnotationFormat-method.html
bd9a057f0680169339e7b8324d6605e7 *help/getMeta+2CMutationAnnotationFormat_Virtual-method.html
bd9a057f0680169339e7b8324d6605e7 *help/getMeta+2CVEP-method.html
bd9a057f0680169339e7b8324d6605e7 *help/getMeta+2CVEP_Virtual-method.html
bd9a057f0680169339e7b8324d6605e7 *help/getMeta-methods.html
bd9a057f0680169339e7b8324d6605e7 *help/getMeta.html
617ead4e34000a91c5cef59ca520162f *help/getMutation+2CGMS-method.html
617ead4e34000a91c5cef59ca520162f *help/getMutation+2CGMS_Virtual-method.html
617ead4e34000a91c5cef59ca520162f *help/getMutation+2CMutationAnnotationFormat-method.html
617ead4e34000a91c5cef59ca520162f *help/getMutation+2CMutationAnnotationFormat_Virtual-method.html
617ead4e34000a91c5cef59ca520162f *help/getMutation+2CVEP-method.html
617ead4e34000a91c5cef59ca520162f *help/getMutation+2CVEP_Virtual-method.html
617ead4e34000a91c5cef59ca520162f *help/getMutation-methods.html
617ead4e34000a91c5cef59ca520162f *help/getMutation.html
e0033924a080671767c92a43d40aab9f *help/getPath+2CGMS-method.html
e0033924a080671767c92a43d40aab9f *help/getPath+2CMutationAnnotationFormat-method.html
e0033924a080671767c92a43d40aab9f *help/getPath+2CVEP-method.html
e0033924a080671767c92a43d40aab9f *help/getPath-methods.html
e0033924a080671767c92a43d40aab9f *help/getPath.html
1b37ec2a35a2fd6ba7e80900bf09d0de *help/getPosition+2CGMS-method.html
1b37ec2a35a2fd6ba7e80900bf09d0de *help/getPosition+2CGMS_Virtual-method.html
1b37ec2a35a2fd6ba7e80900bf09d0de *help/getPosition+2CMutationAnnotationFormat-method.html
1b37ec2a35a2fd6ba7e80900bf09d0de *help/getPosition+2CMutationAnnotationFormat_Virtual-method.html
1b37ec2a35a2fd6ba7e80900bf09d0de *help/getPosition+2CVEP-method.html
1b37ec2a35a2fd6ba7e80900bf09d0de *help/getPosition+2CVEP_Virtual-method.html
1b37ec2a35a2fd6ba7e80900bf09d0de *help/getPosition-methods.html
1b37ec2a35a2fd6ba7e80900bf09d0de *help/getPosition.html
239a4e2ac5579551b581fa1313178ac4 *help/getSample+2CGMS-method.html
239a4e2ac5579551b581fa1313178ac4 *help/getSample+2CGMS_Virtual-method.html
239a4e2ac5579551b581fa1313178ac4 *help/getSample+2CMutationAnnotationFormat-method.html
239a4e2ac5579551b581fa1313178ac4 *help/getSample+2CMutationAnnotationFormat_Virtual-method.html
239a4e2ac5579551b581fa1313178ac4 *help/getSample+2CVEP-method.html
239a4e2ac5579551b581fa1313178ac4 *help/getSample+2CVEP_Virtual-method.html
239a4e2ac5579551b581fa1313178ac4 *help/getSample-methods.html
239a4e2ac5579551b581fa1313178ac4 *help/getSample.html
a66d9cf5c0f87b12660b62c668c4537d *help/getVersion+2CGMS-method.html
a66d9cf5c0f87b12660b62c668c4537d *help/getVersion+2CMutationAnnotationFormat-method.html
a66d9cf5c0f87b12660b62c668c4537d *help/getVersion+2CVEP-method.html
a66d9cf5c0f87b12660b62c668c4537d *help/getVersion-methods.html
a66d9cf5c0f87b12660b62c668c4537d *help/getVersion.html
81381127c8451b12947df721e3d65f7f *help/hg19chr.html
0b971c712db0d5d6c7abe9fd3f148e02 *help/ideoView.html
45dd83b36c8b4c456a5e3c7835f03030 *help/lohSpec.html
71ad9cfbe088d14d570091606146771a *help/lohView.html
4e9e8bb49aa769f99f7f6dae5fec34db *help/lolliplot_AA2sidechain.html
fe58453dbd86e1c49411e17d5c8f26ac *help/lolliplot_buildMain.html
c30f963876ef8d2b20acf17212c5bad2 *help/paths.rds
4ea45917653d4ee13fda62f1b94c45b1 *help/writeData+2CGMS-method.html
4ea45917653d4ee13fda62f1b94c45b1 *help/writeData+2CGMS_Virtual-method.html
4ea45917653d4ee13fda62f1b94c45b1 *help/writeData+2CGMS_Virtual.html
4ea45917653d4ee13fda62f1b94c45b1 *help/writeData+2CMutationAnnotationFormat-method.html
4ea45917653d4ee13fda62f1b94c45b1 *help/writeData+2CMutationAnnotationFormat_Virtual-method.html
4ea45917653d4ee13fda62f1b94c45b1 *help/writeData+2CMutationAnnotationFormat_Virtual.html
4ea45917653d4ee13fda62f1b94c45b1 *help/writeData+2CVEP-method.html
4ea45917653d4ee13fda62f1b94c45b1 *help/writeData+2CVEP_Virtual-method.html
4ea45917653d4ee13fda62f1b94c45b1 *help/writeData+2CVEP_Virtual.html
4ea45917653d4ee13fda62f1b94c45b1 *help/writeData-methods.html
4ea45917653d4ee13fda62f1b94c45b1 *help/writeData.html
485dddb37c91fb48bd904d31b1ff223e *html/00Index.html
1fd16fe58d0c22883a0c97bcdbcdde84 *html/Clinical-class.html
f8ff862fd38cc7b1c61fed2f6c6de418 *html/GMS-class.html
0958e31976e5c7655bc75d6ad14ab7a1 *html/GMS_Virtual-class.html
a629fb8f276d1ffd3d94b52b1a066912 *html/GMS_v4-class.html
9cbd6bedd8422e6c490e48f03c843290 *html/GenVisR.html
5adce8d3d82394abd1b091fca032f963 *html/HCC1395_Germline.html
169945342a7bb4fd44b1539e11199c9d *html/HCC1395_N.html
00d48e2301500f7b1e61681d71477968 *html/HCC1395_T.html
d891d6622db8ffabe87fe96584b3a6ef *html/Lolliplot-class.html
e794c5de870cf849f89ff58275280445 *html/LucCNseg.html
d42fe4fd70ab9f1d8ccf41557e7b6aa8 *html/MutSpectra-class.html
7b0fad8a8cefaad9dc77c41a492c922a *html/MutationAnnotationFormat-class.html
4306250cb4460ab89f769c1af31d11f9 *html/MutationAnnotationFormat_Virtual-class.html
418edcc0a36f872c2057f87557329cda *html/MutationAnnotationFormat_v1.0-class.html
7a8aca595a38405fc00f9dbf0b519b82 *html/MutationAnnotationFormat_v2.0-class.html
c5e6627dec6ede530f3c472b520b07a7 *html/MutationAnnotationFormat_v2.1-class.html
1d4f025ad26ba6b7c6c4c80421a51412 *html/MutationAnnotationFormat_v2.2-class.html
af969431c761b995eec41f76e3a5cedb *html/MutationAnnotationFormat_v2.3-class.html
67892288af8766c86408db736984f268 *html/MutationAnnotationFormat_v2.4-class.html
0824a6d91b82752874677ad6614b78cf *html/PIK3CA.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
60a07ce966b34155bc6fb94b6df98bbc *html/Rainfall-class.html
ed4493813203621fb5e336daf11b8d14 *html/SNPloci.html
b7bcdead3e2c784cbe96af5e8259e686 *html/TvTi.html
2afa6c82e0843234827361ffd0d0892a *html/VEP-class.html
a71aac88e654711894843babe875b197 *html/VEP_Virtual-class.html
720ade586834291d50bf3194d05ea35f *html/VEP_v88-class.html
085497fe99524cdf85f9347ee69fd4eb *html/Waterfall-class.html
f0aba9174694b8eb1e3d54df6c38475e *html/brcaMAF.html
77ce7d1f027b227169a1e623f40bffde *html/cnFreq.html
f893ccb631e67bfe5fb57fc87ee688eb *html/cnSpec.html
f2b6be5878268ba4f7ee8ec36ac67dea *html/cnView.html
4a3f0a39636bc7513931ac6a72ed527b *html/compIdent.html
5b76feae1a5a1a192347cd866f85f1c7 *html/covBars.html
daa5b83ee864b2a56dbdfc89b61b7f28 *html/cytoGeno.html
3cae977eba88d3bad2f33536d7b246b6 *html/drawPlot-methods.html
1a3f7af86b0cca65b2907598b81601b5 *html/genCov.html
f80e5c86a230c8d99bb0f086c1f12f10 *html/geneViz.html
95a3cc7430d276f7855c29aaa67ca1d1 *html/getData-methods.html
aba2484fc4c4baf012a630ee4e896e23 *html/getDescription-methods.html
adc1803b2119de9cdf81dd479c0fe4c4 *html/getGrob-methods.html
2b91ae53f962e131bc48839681eb39ae *html/getHeader-methods.html
787e370465da2d6e6e6dfd9922ee621d *html/getMeta-methods.html
6d371fad6b64591c19b453c55083c2fa *html/getMutation-methods.html
056aacdb2f54c46d2d87ce61097e490e *html/getPath-methods.html
ac0d8588b8df380c77c4140f104f0df3 *html/getPosition-methods.html
846d048cd9d4defc983daf1476ff6b60 *html/getSample-methods.html
7f59420a86391875b2a21a9f8b40f5b2 *html/getVersion-methods.html
d505254ae42d8b71f1c9ce95fe74c67c *html/hg19chr.html
7aa6a3647061ddb89fd4324455f55075 *html/ideoView.html
b9be3bbeff415ab8d357d2c85d892f5a *html/lohSpec.html
e18b157b584bb9a57fc4d8f600816bdf *html/lohView.html
e35284ea8a70a43ca78d24e0acf1bd7d *html/lolliplot.html
3040c056ee6768fc71447d668fad677c *html/lolliplot_AA2sidechain.html
38b1c958f4cdd379fbcb6be8b91467d6 *html/lolliplot_buildMain.html
b270c6746c16c11d97bebb2123aac8d9 *html/waterfall.html
cf7d658930e619c6034fc040f2eb307d *html/writeData-methods.html
