categoryNet {GeneAnswers} | R Documentation

## Plot Category Links

### Description

Function to plot a linkages of specified categories.

### Usage

    categoryNet(catGenesList, centroidSize=NULL, output=c('fixed','interactive'))

### Arguments

`catGenesList` | a list of categories.
`centroidSize` | a numeric vector to specify the size of concept nodes. If NULL, all of concept nodes are represented as the same size solid circles.
`output` | type to specify output figure types.

### Details

catGenesList is a list of categories. Each element contains the genes in the corresponding category, respectively. And the names of the list are categories. If centroidSize is a numeric vector, its values are mapped to the categories in the catGenesList sequentially.

### Value

A category linkage is generated.

### Author(s)

Gang Feng, Pan Du and Simon Lin

### References

Feng, G., Du, P., Krett, N., Tessel, M., Rosen, S., Kibbe, W.A. and Lin, S.M., 'A collection of bioconductor methods to visualize gene-list annotations', BMC Research Notes 2010, 3:10

### See Also

`help`

### Examples

    input <- list('cat1'=c(1,4,2,5), 'cat2'=c(3,5,8,9), 'cat3'=c(2,4,5,9), 'cat4'=c(1,5,3))
    ## Not run: categoryNet(input)

[Package GeneAnswers version 2.36.0 Index]