getcaBIOPATHTerms {GeneAnswers} | R Documentation

## Get Pathway names of given REACTOME PATH_DB IDs

### Description

Function to map given caBIO pathway IDs to Pathway names. This function is not supported starting this version due to the termination of the caBig project.

### Usage

    getcaBIOPATHTerms(caBIOPATHIDs)

### Arguments

`caBIOPATHIDs` | a caBIO pathway IDs vector

### Details

caBIO(Cancer Bioinformatics Infrastructure Objects, https://cabig.nci.nih.gov/tools/cabio) integrates three pathway databases from NCI-Nature curated, Biocarta and Reactome. Therefore, terms could be same from different databases and the source library is added the end of each term.

### Value

return the caBIO pathway terms of given caBIO pathway IDs.

### Author(s)

Gang Feng, Pan Du and Simon Lin

### References

Feng, G., Du, P., Krett, N., Tessel, M., Rosen, S., Kibbe, W.A. and Lin, S.M., 'A collection of bioconductor methods to visualize gene-list annotations', BMC Research Notes 2010, 3:10

### Examples

    ## Not run: getcaBIOPATHTerms(c('7622', '289', '7173'))

[Package GeneAnswers version 2.36.0 Index]