junctions {GeneStructureTools} | R Documentation

## Method junctions

### Description

Method junctions

### Usage

    junctions(whippetDataSet)

    ## S4 method for signature 'whippetDataSet'
    junctions(whippetDataSet)

### Arguments

`whippetDataSet` | whippetDataSet generated from `readWhippetDataSet()`

### Value

junctions GRanges object (originally from a whippet .jnc file)

### See Also

Other whippet data processing: `coordinates`, `diffSplicingResults`, `filterWhippetEvents`, `formatWhippetEvents`, `readCounts`, `readWhippetDIFFfiles`, `readWhippetDataSet`, `readWhippetJNCfiles`, `readWhippetPSIfiles`, `whippetTranscriptChangeSummary`

### Examples

    whippetFiles <- system.file("extdata","whippet/",
    package = "GeneStructureTools")
    wds <- readWhippetDataSet(whippetFiles)

    junctions <- junctions(wds)

[Package GeneStructureTools version 1.14.0 Index]