addBroadTypes {GeneStructureTools} | R Documentation

## Change transcript biotypes to a broader set

### Description

Change transcript biotypes to a broader set in a GRanges GTF object

### Usage

    addBroadTypes(gtf)

### Arguments

`gtf` | GRanges object of the GTF

### Value

GRanges object of the GTF with new transcript types

### Author(s)

Beth Signal

### See Also

Other gtf manipulation: `UTR2UTR53`, `exonsToTranscripts`, `filterGtfOverlap`, `removeDuplicateTranscripts`, `removeSameExon`, `reorderExonNumbers`

### Examples

    gtfFile <- system.file("extdata","example_gtf.gtf",
    package = "GeneStructureTools")
    gtf <- rtracklayer::import(gtfFile)
    gtf <- addBroadTypes(gtf)

[Package GeneStructureTools version 1.14.0 Index]