readWhippetJNCfiles {GeneStructureTools} | R Documentation

## Read in a list of whippet .jnc.gz files and format as a GRanges object

### Description

Read in a list of whippet .jnc.gz files and format as a GRanges object

### Usage

    readWhippetJNCfiles(files)

### Arguments

`files` | vector of *.jnc.gz file names

### Value

GRanges object with junctions

### Author(s)

Beth Signal

### See Also

Other whippet data processing: `coordinates`, `diffSplicingResults`, `filterWhippetEvents`, `formatWhippetEvents`, `junctions`, `readCounts`, `readWhippetDIFFfiles`, `readWhippetDataSet`, `readWhippetPSIfiles`, `whippetTranscriptChangeSummary`

### Examples

    whippetFiles <- list.files(system.file("extdata","whippet/",
    package = "GeneStructureTools"), full.names = TRUE)
    jncFiles <- whippetFiles[grep(".jnc", whippetFiles)]
    whippetJNC <- readWhippetJNCfiles(jncFiles)

[Package GeneStructureTools version 1.14.0 Index]