topgoDE_macrophage_IFNg_vs_naive {GeneTonic} | R Documentation

## A sample `res_enrich` object

### Description

A sample `res_enrich` object, generated with the `topGOtable` function (from the `pcaExplorer` package).

### Details

This `res_enrich` object on the data from the `macrophage` package has been created by analyzing downstream the differentially expressed genes when comparing IFNg treated samples vs naive samples, accounting for the different cell lines included.

Details on how this object has been created are included in the `create_gt_data.R` script, included in the `scripts` folder of the `GeneTonic` package.

### References

Alasoo, et al. "Shared genetic effects on chromatin and gene expression indicate a role for enhancer priming in immune response", Nature Genetics, January 2018 doi: 10.1038/s41588-018-0046-7.

### See Also

Other pathway-analysis-results: `enrichr_output_macrophage`, `gostres_macrophage`

[Package GeneTonic version 1.6.4 Index]