calcCumulativePartitionsRef {GenomicDistributions} | R Documentation

## Calculates the cumulative distribution of overlaps for a query set to a reference assembly

### Description

This function is a wrapper for `calcCumulativePartitions` that uses built-in partitions for a given reference genome assembly.

### Usage

    calcCumulativePartitionsRef(query, refAssembly)

### Arguments

`query` | A GenomicRanges or GenomicRangesList object with query regions
`refAssembly` | A character vector specifying the reference genome assembly (*e.g.* 'hg19'). This will be used to grab chromosome sizes with `getTSSs`.

### Value

A data.frame indicating the number of query region overlaps in several genomic partitions.

### Examples

    calcCumulativePartitionsRef(vistaEnhancers, "hg19")

[Package GenomicDistributions version 1.2.0 Index]