calcDinuclFreq {GenomicDistributions} | R Documentation

## Calculate Dinuclotide content over genomic ranges

### Description

Given a reference genome (BSgenome object) and ranges on the reference, this function returns a data.table with counts of dinucleotides within the GRanges object.

### Usage

    calcDinuclFreq(query, ref, rawCounts = FALSE)

### Arguments

`query` | A GRanges object with query sets
`ref` | Reference genome BSgenome object
`rawCounts` | a logical indicating whether the raw numbers should be displayed, rather than percentages (optional).

### Value

A data.table with counts of dinucleotides across the GRanges object

### Examples

    ## Not run:
    bsg = loadBSgenome('hg19')
    DNF = calcDinuclFreq(vistaEnhancers, bsg)

    ## End(Not run)

[Package GenomicDistributions version 1.2.0 Index]