plotPartitions {GenomicDistributions} | R Documentation

## Produces a barplot showing how query regions of interest are distributed across a given partition list

### Description

This function can be used to test a GRanges object against any arbitrary list of genome partitions. The partition list is a priority-ordered list of GRanges objects. Each region in the query will be assigned to a given partition that it overlaps with the highest priority.

### Usage

    plotPartitions(assignedPartitions, numbers = FALSE, stacked = FALSE)

### Arguments

`assignedPartitions` | A table holding the frequency of assignment to each of the partitions. Produced by `calcPartitions`
`numbers` | logical indicating whether raw overlaps should be plotted instead of the default percentages
`stacked` | logical indicating that data should be plotted as stacked bar plot

### Value

A ggplot object using a barplot to show the distribution of the query regions across a given partition list.

### Examples

    p = calcPartitionsRef(vistaEnhancers, "hg19")
    partPlot = plotPartitions(p)
    partCounts = plotPartitions(p, numbers=TRUE)
    partPlot = plotPartitions(p, stacked=TRUE)

[Package GenomicDistributions version 1.2.0 Index]