calcGCContent {GenomicDistributions} | R Documentation

## Calculate GC content over genomic ranges

### Description

Given a reference genome as a BSgenome object and some ranges on that reference, this function will return a vector of the same length as the granges object, with percent of Cs and Gs.

### Usage

    calcGCContent(query, ref)

### Arguments

`query` | A GenomicRanges or GenomicRangesList object with query regions.
`ref` | Reference genome BSgenome object.

### Value

A numeric vector of list of vectors with the GC percentage of the query regions.

### Examples

    ## Not run:
    bsg = loadBSgenome('hg19')
    gcvec = calcGCContent(vistaEnhancers, bsg)

    ## End(Not run)

[Package GenomicDistributions version 1.2.0 Index]