plotFeatureDist {GenomicDistributions} | R Documentation

## Plots a histogram of distances to genomic features

### Description

Given the results from `featureDistribution`, plots a histogram of distances surrounding the features of interest

### Usage

    plotFeatureDist(
      dists,
      bgdists = NULL,
      featureName = "features",
      numbers = FALSE,
      nbins = 50,
      size = 1e+05,
      infBins = FALSE,
      tile = FALSE,
      labelOrder = "default"
    )

### Arguments

`dists` | Results from `featureDistribution`
`bgdists` | Background distances. If provided, will plot a background distribution of expected distances
`featureName` | Character vector for plot labels (optional).
`numbers` | a logical indicating whether the raw numbers should be displayed, rather than percentages (optional).
`nbins` | Number of bins on each side of the center point.
`size` | Number of bases to include in plot on each side of the center point.
`infBins` | Include catch-all bins on the sides?
`tile` | Turn on a tile mode, which plots a tiled figure instead of a histogram.
`labelOrder` | – Enter "default" to order by order of user input (default); Enter "center" to order by value in tile in the closest proximity to the center of features (in case TSS is used - center is TSS) (center).

### Value

A ggplot2 plot object

### Examples

    TSSdist = calcFeatureDistRefTSS(vistaEnhancers, "hg19")
    f = plotFeatureDist(TSSdist, featureName="TSS")

[Package GenomicDistributions version 1.2.0 Index]