annotateRAV {GenomicSuperSignature} | R Documentation

## Search the top enriched pathways for RAV

### Description

Search the top enriched pathways for RAV

### Usage

    annotateRAV(RAVmodel, ind, n = 5, abs = FALSE)

### Arguments

`RAVmodel` | PCAGenomicSignatures object.
`ind` | An integer for RAV you want to check the enriched pathways.
`n` | A number of top enriched pathways to output. Default is 5.
`abs` | Default is `FALSE`. If it's set to `TRUE`, the enriched pathways will be listed based on `abs(NES)`.

### Value

A data frame with `n` rows and 4 columns; Description, NES, pvalue, and qvalues

### Examples

    data(miniRAVmodel)
    annotateRAV(miniRAVmodel, ind = 695)

[Package GenomicSuperSignature version 1.2.1 Index]