makeGeneList {GenomicSuperSignature} | R Documentation

## Order genes in loading vectors

### Description

This function takes Z matrix (= averaged loadings) and orders the genes in each loading vector (= RAV) in a descending manner.

### Usage

    makeGeneList(LoadingMatrix, LoadingVector = NULL, abs = TRUE)

### Arguments

`LoadingMatrix` | An avgloading matrix. Rows represent genes and columns represent clusters of principle components
`LoadingVector` | A list of column names or indexes of `LoadingMatrix` you want to check. Default is `NULL`, under which the function takes the all column names of `LoadingMatrix`
`abs` | Under the defaul condition (`TRUE`), this function will create a gene list based on the absolute value.

### Value

A list of loadings selected by `LoadingVector`, where all the genes in each loading are listed in descending order.

[Package GenomicSuperSignature version 1.2.1 Index]