subsetEnrichedPathways {GenomicSuperSignature} | R Documentation

## Subset enriched pathways of RAV

### Description

Subset enriched pathways of RAV

### Usage

    subsetEnrichedPathways(RAVmodel, ind = NULL, n = 10, both = FALSE)

### Arguments

`RAVmodel` | PCAGenomicSignatures object. Also an output from `GSEA` can be used.
`ind` | A numeric vector containing the RAV number you want to check enriched pathways. If not specified, this function returns results from all the RAVs.
`n` | The number of top and bottom pathways to be selected based on normalized enrichment score (NES).
`both` | Default is `FALSE`, where only the top `n` pathways will be printed. If it is set to `TRUE`, the output will contain both top and bottom `n` pathways.

### Value

A DataFrame with top and bottom `n` pathways from the enrichment results.

### Examples

    data(miniRAVmodel)

    # all RAVS in model
    subsetEnrichedPathways(miniRAVmodel,n=5)

    # only a specific RAV (note the colnames above)
    subsetEnrichedPathways(miniRAVmodel,ind=695,n=5)

[Package GenomicSuperSignature version 1.2.1 Index]