checkQCFlags,NanoStringGeoMxSet-method {GeomxTools} | R Documentation

## checkQCFlags

### Description

checkQCFlags

### Usage

    ## S4 method for signature 'NanoStringGeoMxSet'
    checkQCFlags(object, removeLowLocalOutliers = FALSE, ...)

### Arguments

`object` | name of the NanoStringGeoMxSet object to check the QC Flags
`removeLowLocalOutliers` | logical, if TRUE it sets outlier counts to zero, default is FALSE,
`...` | optional arguments

### Value

NanoStringGeoMxSet

### Examples

    datadir <- system.file("extdata", "DSP_NGS_Example_Data",
      package = "GeomxTools"
    )
    demoData <- readRDS(file.path(datadir, "/demoData.rds"))
    QCobject <- checkQCFlags(demoData)

[Package GeomxTools version 2.0.0 Index]