summarizeNegatives {GeomxTools} | R Documentation

## Calculate negative probe summary stats

### Description

Calculate negative probe summary stats

### Usage

    summarizeNegatives(object, functionList = c())

### Arguments

`object` | name of the NanoStringGeoMxSet object to summarize
`functionList` | optional list of additional functions to calculate negative probe stats, list element names should correspond to expected stat column header

### Value

a NanoStringGeoMxSet object with negative probe summary stats appended to sample data

### Examples

    datadir <- system.file("extdata", "DSP_NGS_Example_Data",
                           package="GeomxTools")
    demoData <- readRDS(file.path(datadir, "/demoData.rds"))
    demoData <-
        summarizeNegatives(demoData,
                           functionList=c(mean=mean, min=min, max=max))

[Package GeomxTools version 2.0.0 Index]