checkQCFlags {GeomxTools} | R Documentation

## Check QC Flags in the GeoMxSet and removes the probe or sample from the object

### Description

Check QC Flags in the GeoMxSet and removes the probe or sample from the object

### Usage

    checkQCFlags(object, ...)

### Arguments

`object` | name of the NanoStringGeoMxSet object to check the QC Flags
`...` | for other arguments

### Value

a NanoStringGeoMxSet object probes and samples failing QC removed

### Examples

    datadir <- system.file("extdata", "DSP_NGS_Example_Data",
      package = "GeomxTools"
    )
    demoData <- readRDS(file.path(datadir, "/demoData.rds"))
    QCobject <- checkQCFlags(demoData)

[Package GeomxTools version 2.0.0 Index]