readDccFile {GeomxTools} | R Documentation

## Read DCC File

### Description

Read a NanoString GeoMx Digital Count Conversion (DCC) file.

### Usage

    readDccFile(file)

### Arguments

`file` | A character string containing the path to the DCC file.

### Value

A list object with two elements:

``"Header"`` | a `data.frame` object containing the protocol and sequencing information.
``"Code_Summary"`` | a `data.frame` object containing the target probe counts.

### Author(s)

Zhi Yang & Nicole Ortogero

### See Also

`readNanoStringGeoMxSet`

### Examples

    datadir <- system.file("extdata", "DSP_NGS_Example_Data",
                           package="GeomxTools")
    dccFiles <- dir(datadir, pattern=".dcc$", full.names=TRUE)
    dccData <- sapply(dccFiles, readDccFile, simplify = FALSE)

[Package GeomxTools version 2.0.0 Index]