setQCFlags,NanoStringGeoMxSet-method {GeomxTools} | R Documentation

## Add QC flags to feature and protocol data simultaneously

### Description

Add QC flags to feature and protocol data simultaneously

### Usage

    ## S4 method for signature 'NanoStringGeoMxSet'
    setQCFlags(object, qcCutoffs = DEFAULTS, ...)

### Arguments

`object` | name of the object class to perform QC on NanoStringGeoMxSet, use the NanoStringGeoMxSet class
`qcCutoffs` | list of cutoffs and thresholds to use for QC
`...` | optional parameters to pass

### Value

the object that QC was performed on

### Examples

    datadir <- system.file("extdata", "DSP_NGS_Example_Data",
                           package="GeomxTools")
    demoData <- readRDS(file.path(datadir, "/demoData.rds"))
    setQCFlags(demoData)

[Package GeomxTools version 2.0.0 Index]