# A fast hierarchical graph-based clustering method

## Documentation for package ‘HGC’ version 1.2.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

CKNN.Construction | Building Unweighted Continuous K Nearest Neighbor Graph
FindClusteringTree | The HGC algorithm embedded in Seurat pipeline
HGC.dendrogram | Hierarchical Graph-based Clustering
HGC.parameter | Recording the Parameters of the Graph-based Hierarchical Clustering
HGC.PlotARIs | Calculating and Visualizing ARIs of the clustering results with given labels
HGC.PlotDendrogram | Visualizing the dendrogram
HGC.PlotParameter | Visualizing the Parameter Records during Clustering
KNN.Construction | Building Unweighted K Nearest Neighbor Graph
MST.Construction | Building Unweighted Minimum Spanning Tree Graph
PMST.Construction | Building Unweighted Perturbed Minimum Spanning Tree Graph
Pollen | Embeddings of the Pollen datasets in the principal component space.
RNN.Construction | Building Unweighted epsilon Nearest Neighbor Graph
SNN.Construction | Building Unweighted Shared Nearest Neighbor Graph