hpaExport {HPAanalyze} | R Documentation

## Export the subset data

### Description

Export the list object generated by `hpaSubset()` into xlsx format. Due to the size of some HPA datasets, as well as the limitation of the output format, exporting the full datasets generated by `hpaDownload()` is not recommended.

### Usage

    hpaExport(data, fileName, fileType = "xlsx")

### Arguments

`data` | Input the list object generated by `hpaSubset()`
`fileName` | A string indicate the desired output file name. Do not include file extension such as `'.xlsx'`.
`fileType` | The format as which the data will be exported. Choose one of these options: `'xlsx'`, `'csv'` and `'tsv'`.

### Value

- `'xlsx'`: return one .xlsx file named `'fileName.xlsx'`. One individual sheet for each dataset in the input list object.

- `'csv'`: return .csv files, one for each dataset in the input list object, named `'fileName_datasetName.csv'`

- `'tsv'`: return .tsv files, one for each dataset in the input list object, named `'fileName_datasetName.tsv'`

### See Also

Other downloadable datasets functions: `hpaDownload()`, `hpaSubset()`

### Examples

      downloadedData <- hpaDownload(downloadList='histology', version='example')
      geneList <- c('TP53', 'EGFR')
      tissueList <- c('breast', 'cerebellum', 'skin 1')
      cancerList <- c('breast cancer', 'glioma', 'melanoma')

      subsetData <- hpaSubset(data=downloadedData,
                               targetGene=geneList,
                               targetTissue=tissueList,
                               targetCancer=cancerList)
      hpaExport(data=subsetData,
                fileName='TP53_EGFR_in_tissue_cancer.xlsx',
                fileType='xlsx')

[Package HPAanalyze version 1.12.0 Index]