calculateTC {HPiP} | R Documentation

## Calculate Tripeptide Composition (TC) Descriptor

### Description

This function calculates Tripeptide Composition (TC) descriptor for data input.

### Usage

    calculateTC(x)

### Arguments

`x` | A data.frame containing gene/protein names and their fasta sequences.

### Details

calculateTC

### Value

A length 8,000 named vector for the data input.

### Author(s)

Matineh Rahmatbakhsh, matinerb.94@gmail.com

### References

Liao, B., Jiang, J.-B., Zeng, Q.-G., and Zhu, W. (2011). Predicting apoptosis protein subcellular location with PseAAC by incorporating tripeptide composition. Protein Pept. Lett. 18, 1086–1092

### See Also

See `calculateAAC`,`calculateDC` and `calculateTC_Sm` for Amino Acid Composition, Dipeptide Composition and Tripeptide Composition (TC) Descriptor from Biochemical Similarity Classes.

### Examples

    data(UP000464024_df)
    x_df <- calculateTC(UP000464024_df)
    head(x_df, n = 2L)

[Package HPiP version 1.0.0 Index]