getMutationFeatureVector {HiLDA} | R Documentation

## Get mutation feature vector from context sequence data and reference and alternate allele information

### Description

Get mutation feature vector from context sequence data and reference and alternate allele information

### Usage

    getMutationFeatureVector(
      context,
      ref_base,
      alt_base,
      strandInfo = NULL,
      numBases,
      type
    )

### Arguments

`context` | the context sequence data around the mutated position. This shoud be Biostrings::DNAStringSet class
`ref_base` | the reference bases at the mutated position.
`alt_base` | the alternate bases at the mutated position.
`strandInfo` | transcribed strand information at the mutated position. (this is optional)
`numBases` | the number of flanking bases around the mutated position.
`type` | the type of mutation feature vecotr (should be "independent" or "full").

### Value

a mutation featuer vector

[Package HiLDA version 1.8.0 Index]