plotGene {INSPEcT} | R Documentation

## Plot the pre-modeled and modeled profiles for one gene

### Description

A method to see the shapes of the estimated synthesis, degradation and processing rates, pre-RNA and total RNA concentrations (solid thin lines) their variances (dashed lines) and the modeled rates and concentrations (ticker solid line) of a single gene.

### Usage

    plotGene(
      object,
      ix,
      relative_expression = FALSE,
      fix.yaxis = FALSE,
      priors = TRUE,
      constantModel = FALSE
    )

    ## S4 method for signature 'INSPEcT'
    plotGene(
      object,
      ix,
      relative_expression = FALSE,
      fix.yaxis = FALSE,
      priors = TRUE,
      constantModel = FALSE
    )

### Arguments

`object` | An object of class INSPEcT
`ix` | Eiher a rowname or a row number to select one single gene
`relative_expression` | A logical, indicating whether expressions are rates should be plotted relative to their initial value (Default=FALSE).
`fix.yaxis` | A logical, indicating whether the limits for y-axis of degradation and processing rates should be fixed relative to their distributions
`priors` | A logical, if true the priors of the rates are plotted
`constantModel` | A logical, if true the constant model for the + nascent modeling are shown

### Value

A list containing total RNA levels and their confidence interval (levels plus and minus one standard deviation), pre-RNA lelevs and their confidence intervals, synthsis rates and their confidence intervals, degradation rates and processing rates of the selected gene.

### Examples

    nascentInspObj10 <- readRDS(system.file(package='INSPEcT', 'nascentInspObj10.rds'))
    plotGene(nascentInspObj10, 1)

[Package INSPEcT version 1.24.0 Index]