sharing_heatmap {ISAnalytics} | R Documentation

## Plot IS sharing heatmaps.

### Description

Displays the IS sharing calculated via is_sharing as heatmaps.

### Usage

    sharing_heatmap(
      sharing_df,
      show_on_x = "g1",
      show_on_y = "g2",
      absolute_sharing_col = "shared",
      title_annot = NULL,
      plot_relative_sharing = TRUE,
      rel_sharing_col = c("on_g1", "on_union"),
      show_perc_symbol_rel = TRUE,
      interactive = FALSE
    )

### Arguments

`sharing_df` | The data frame containing the IS sharing data
`show_on_x` | Name of the column to plot on the x axis
`show_on_y` | Name of the column to plot on the y axis
`absolute_sharing_col` | Name of the column that contains the absolute values of IS sharing
`title_annot` | Additional text to display in the title
`plot_relative_sharing` | Logical. Compute heatmaps also for relative sharing?
`rel_sharing_col` | Names of the columns to consider as relative sharing. The function is going to plot one heatmap per column in this argument.
`show_perc_symbol_rel` | Logical. Only relevant if `plot_relative_sharing` is set to TRUE, should the percentage symbol be displayed in relative heatmaps?
`interactive` | Logical. Requires the package plotly is required for this functionality. Returns the heatmaps as interactive HTML widgets.

### Value

A list of plots or widgets

### See Also

is_sharing

Other Plotting functions: `CIS_volcano_plot()`, `HSC_population_plot()`, `circos_genomic_density()`, `integration_alluvial_plot()`, `sharing_venn()`, `top_abund_tableGrob()`

### Examples

    data("integration_matrices", package = "ISAnalytics")
    data("association_file", package = "ISAnalytics")
    aggreg <- aggregate_values_by_key(
        x = integration_matrices,
        association_file = association_file,
        value_cols = c("seqCount", "fragmentEstimate")
    )
    sharing <- is_sharing(aggreg,
        minimal = FALSE,
        include_self_comp = TRUE
    )
    sharing_heatmaps <- sharing_heatmap(sharing_df = sharing)
    sharing_heatmaps$absolute
    sharing_heatmaps$on_g1
    sharing_heatmaps$on_union

[Package ISAnalytics version 1.4.3 Index]