aggregate_metadata	aggregate_metadata
aggregate_values_by_key	aggregate_values_by_key
annotation_issues	annotation_issues
annotation_IS_vars	annotation_IS_vars
association_file	association_file
association_file_columns	association_file_columns
as_sparse_matrix	as_sparse_matrix
available_outlier_tests	available_outlier_tests
blood_lineages_default	blood_lineages_default
circos_genomic_density	circos_genomic_density
CIS_grubbs	CIS_grubbs
CIS_volcano_plot	CIS_volcano_plot
clinical_relevant_suspicious_genes	clinical_relevant_suspicious_genes
comparison_matrix	comparison_matrix
compute_abundance	compute_abundance
compute_near_integrations	compute_near_integrations
cumulative_count_union	cumulative_count_union
cumulative_is	cumulative_is
date_columns_coll	date_columns_coll
date_formats	date_formats
default_iss_file_prefixes	default_iss_file_prefixes
default_meta_agg	default_meta_agg
default_report_path	default_report_path
default_stats	default_stats
generate_blank_association_file	generate_blank_association_file
generate_Vispa2_launch_AF	generate_Vispa2_launch_AF
HSC_population_plot	HSC_population_plot
HSC_population_size_estimate	HSC_population_size_estimate
import_association_file	import_association_file
import_parallel_Vispa2Matrices	import_parallel_Vispa2Matrices
import_parallel_Vispa2Matrices_auto	import_parallel_Vispa2Matrices_auto
import_parallel_Vispa2Matrices_interactive	import_parallel_Vispa2Matrices_interactive
import_single_Vispa2Matrix	import_single_Vispa2Matrix
import_Vispa2_stats	import_Vispa2_stats
integration_alluvial_plot	integration_alluvial_plot
integration_matrices	integration_matrices
ISAnalytics	ISAnalytics
ISAnalytics-deprecated	ISAnalytics-deprecated
iss_source	iss_source
is_sharing	is_sharing
known_clinical_oncogenes	known_clinical_oncogenes
mandatory_IS_vars	mandatory_IS_vars
matching_options	matching_options
outliers_by_pool_fragments	outliers_by_pool_fragments
outlier_filter	outlier_filter
proto_oncogenes	proto_oncogenes
purity_filter	purity_filter
quantification_types	quantification_types
realign_after_collisions	realign_after_collisions
reduced_AF_columns	reduced_AF_columns
refGenes_hg19	refGenes_hg19
refGenes_mm9	refGenes_hg19
refGene_table_cols	refGene_table_cols
remove_collisions	remove_collisions
sample_statistics	sample_statistics
separate_quant_matrices	separate_quant_matrices
sharing_heatmap	sharing_heatmap
sharing_venn	sharing_venn
threshold_filter	threshold_filter
top_abund_tableGrob	top_abund_tableGrob
top_integrations	top_integrations
tumor_suppressors	proto_oncogenes
unzip_file_system	unzip_file_system
