get_UTR3CDS {InPAS} | R Documentation

## Get 3' UTRs and their last CDS regions based on CP sites

### Description

Get 3' UTRs and their last CDS regions based on CP sites

### Usage

    get_UTR3CDS(sqlite_db, chr.utr3, BPPARAM = NULL)

### Arguments

`sqlite_db` | A path to the SQLite database for InPAS, i.e. the output of setup_sqlitedb().
`chr.utr3` | An object of GenomicRanges::GRanges, specifying UTR3 GRanges for a chromosome. It must be one element of an output of `extract_UTR3Anno()`.
`BPPARAM` | an optional BiocParallel::BiocParallelParam instance determining the parallel back-end to be used during evaluation, or a list of BiocParallelParam instances, to be applied in sequence for nested calls to bplapply. It can be set to NULL or bpparam()

### Value

An object of GenomicRanges::GRanges containing GRanges for UTRs with alternative CP sites and the corresponding last CDSs.

### Author(s)

Jianhong Ou, Haibo Liu

[Package InPAS version 2.2.0 Index]