InPAS {InPAS} | R Documentation

## A package for identifying novel Alternative PolyAdenylation Sites (PAS) based on RNA-seq data

### Description

The InPAS package provides three categories of important functions: parse_TxDb, extract_UTR3Anno, assemble_allCov, get_ssRleCov, run_coverageQC, get_UTR3eSet, test_dPDUI, run_singleSampleAnalysis, run_singleGroupAnalysis, run_limmaAnalysis, filter_testOut, get_usage4plot, setup_GSEA

### functions for retrieving 3' UTR annotation

parse_TxDb, extract_UTR3Anno

### functions for processing read coverage data

assemble_allCov, get_ssRleCov, run_coverageQC

### functions for alternative polyadenylation site analysis

test_dPDUI, run_singleSampleAnalysis, run_singleGroupAnalysis, run_limmaAnalysis, filter_testOut, get_usage4plot

[Package InPAS version 2.2.0 Index]