get_zScoreCutoff {InPAS} | R Documentation

## Calculate local background cutoff value

### Description

calculate local background z-score cutoff

### Usage

    get_zScoreCutoff(background, introns, totalCov, utr3, z = 2)

### Arguments

`background` | A character(1) vector, indicating how background coverage is defined.
`introns` | An object of GenomicRanges::GRanges for introns
`totalCov` | total coverage, a list of output from `get_totalCov()` for each chromosome
`utr3` | An object of GenomicRanges::GRangesList, output of `extract_UTR3Anno()`
`z` | Z score cutoff value

### Value

A named numeric vector containing local background Z-score cutoff values. The names are GRanges's name for 3' UTRs.

### Author(s)

Jianhong Ou, Haibo Liu

[Package InPAS version 2.2.0 Index]