run_singleSampleAnalysis {InPAS} | R Documentation

## do APA analysis for a single sample

### Description

do APA event analysis for a single sample Using Poisson Hidden Markov models

### Usage

    run_singleSampleAnalysis(UTR3eset)

### Arguments

`UTR3eset` | the output of `get_UTR3eSet()`

### Details

the test will be performed by comparing a two-state versus an one-state Poisson Hidden Markov models.

### Value

a matrix containing test results

### Author(s)

Jianhong Ou

### See Also

UTR3eSet, `get_UTR3eSet()`, `depmixS4::depmix()`

### Examples

    path <- system.file("extdata", package = "InPAS")
    load(file.path(path, "eset.MAQC.rda"))
    res <- InPAS:::run_singleSampleAnalysis(eset)

[Package InPAS version 2.2.0 Index]